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Ccdc180 coiled-coil domain containing 180 [ Mus musculus (house mouse) ]

Gene ID: 381522, updated on 9-Dec-2024

Summary

Official Symbol
Ccdc180provided by MGI
Official Full Name
coiled-coil domain containing 180provided by MGI
Primary source
MGI:MGI:2685871
See related
Ensembl:ENSMUSG00000035539 AllianceGenome:MGI:2685871
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Mus musculus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
Also known as
Gm1025; E230008N13Rik
Summary
Is expressed in brain and reproductive system. Orthologous to human CCDC180 (coiled-coil domain containing 180). [provided by Alliance of Genome Resources, Dec 2024]
Expression
Biased expression in testis adult (RPKM 7.2), lung adult (RPKM 0.8) and 1 other tissue See more
Orthologs
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Genomic context

See Ccdc180 in Genome Data Viewer
Location:
4 B1; 4 24.42 cM
Exon count:
39
Annotation release Status Assembly Chr Location
RS_2024_02 current GRCm39 (GCF_000001635.27) 4 NC_000070.7 (45890303..45950774)
108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 4 NC_000070.6 (45890303..45950774)

Chromosome 4 - NC_000070.7Genomic Context describing neighboring genes Neighboring gene aldehyde dehydrogenase 1 family, member B1 Neighboring gene insulin-like growth factor binding protein-like 1 Neighboring gene STARR-seq mESC enhancer starr_10113 Neighboring gene STARR-seq mESC enhancer starr_10114 Neighboring gene STRA6-like Neighboring gene tudor domain containing 7 Neighboring gene tropomodulin 1 Neighboring gene predicted gene, 52729

Genomic regions, transcripts, and products

Expression

  • Project title: Mouse ENCODE transcriptome data
  • Description: RNA profiling data sets generated by the Mouse ENCODE project.
  • BioProject: PRJNA66167
  • Publication: PMID 25409824
  • Analysis date: n/a

Variation

Alleles

Alleles of this type are documented at Mouse Genome Informatics  (MGI)
  • Targeted (2) 

General protein information

Preferred Names
coiled-coil domain-containing protein 180

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_198660.2NP_941062.2  coiled-coil domain-containing protein 180

    Status: PROVISIONAL

    Source sequence(s)
    AL772381
    Consensus CDS
    CCDS57275.1
    UniProtKB/TrEMBL
    F6QNN0, J3QNE4
    Related
    ENSMUSP00000136714.2, ENSMUST00000178561.8
    Conserved Domains (3) summary
    pfam04497
    Location:10091101
    Pox_E2-like; Poxviridae protein
    pfam14643
    Location:148616
    DUF4455; Domain of unknown function (DUF4455)
    pfam14644
    Location:13461543
    DUF4456; Domain of unknown function (DUF4456)

RefSeqs of Annotated Genomes: GCF_000001635.27-RS_2024_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCm39 C57BL/6J

Genomic

  1. NC_000070.7 Reference GRCm39 C57BL/6J

    Range
    45890303..45950774
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_017320287.2XP_017175776.1  coiled-coil domain-containing protein 180 isoform X1

    UniProtKB/TrEMBL
    F6QNN0
    Conserved Domains (2) summary
    pfam14643
    Location:148616
    DUF4455; Domain of unknown function (DUF4455)
    pfam14644
    Location:13171521
    DUF4456; Domain of unknown function (DUF4456)
  2. XM_017320289.1XP_017175778.1  coiled-coil domain-containing protein 180 isoform X2

    Conserved Domains (1) summary
    pfam14643
    Location:148616
    DUF4455; Domain of unknown function (DUF4455)
  3. XM_017320290.1XP_017175779.1  coiled-coil domain-containing protein 180 isoform X3

    Conserved Domains (1) summary
    pfam14643
    Location:148616
    DUF4455; Domain of unknown function (DUF4455)
  4. XM_017320291.2XP_017175780.1  coiled-coil domain-containing protein 180 isoform X4

    Conserved Domains (1) summary
    pfam14643
    Location:148616
    DUF4455; Domain of unknown function (DUF4455)

RNA

  1. XR_004941930.1 RNA Sequence