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id4.S inhibitor of DNA binding 4, HLH protein S homeolog [ Xenopus laevis (African clawed frog) ]

Gene ID: 380396, updated on 27-Jan-2018

Summary

Official Symbol
id4.S
Official Full Name
inhibitor of DNA binding 4, HLH protein S homeolog
Primary source
Xenbase:XB-GENE-876371
Locus tag
XELAEV_18033495mg
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Xenopus laevis
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Amphibia; Batrachia; Anura; Pipoidea; Pipidae; Xenopodinae; Xenopus; Xenopus
Also known as
id4; id4a; idb4; id4-a; id4-b; id4.L; bhlhb27

Genomic context

See id4.S in Genome Data Viewer
Location:
chromosome: 6S
Exon count:
3
Annotation release Status Assembly Chr Location
100 current Xenopus_laevis_v2 (GCF_001663975.1) 6S NC_030735.1 (72506961..72512077)

Chromosome 6S - NC_030735.1Genomic Context describing neighboring genes Neighboring gene ring finger 144B S homeolog Neighboring gene uncharacterized LOC108719715 Neighboring gene lysophospholipid acyltransferase 1-like Neighboring gene E2F transcription factor 3 S homeolog

Genomic regions, transcripts, and products

Genomic Sequence:
NC_030735.1 Chromosome 6S Reference Xenopus_laevis_v2 Primary Assembly

Pathways from BioSystems

  • TGF-beta signaling pathway, organism-specific biosystem (from KEGG)
    TGF-beta signaling pathway, organism-specific biosystemThe transforming growth factor-beta (TGF-beta) family members, which include TGF-betas, activins and bone morphogenetic proteins (BMPs), are structurally related secreted cytokines found in species r...
  • TGF-beta signaling pathway, conserved biosystem (from KEGG)
    TGF-beta signaling pathway, conserved biosystemThe transforming growth factor-beta (TGF-beta) family members, which include TGF-betas, activins and bone morphogenetic proteins (BMPs), are structurally related secreted cytokines found in species r...

General protein information

Preferred Names
DNA-binding protein inhibitor ID-4
Names
inhibitor of DNA binding 4 a
inhibitor of DNA binding 4, dominant negative helix-loop-helix protein L homeolog
inhibitor of DNA binding 4, dominant negative helix-loop-helix protein S homeolog
inhibitor of differentiation 4

NCBI Reference Sequences (RefSeq)

RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001087235.1NP_001080704.1  DNA-binding protein inhibitor ID-4

    See identical proteins and their annotated locations for NP_001080704.1

    Status: PROVISIONAL

    Source sequence(s)
    BC045022
    UniProtKB/Swiss-Prot
    Q7ZXF3
    UniProtKB/TrEMBL
    A0A1L8FSH9
    Conserved Domains (1) summary
    cd00083
    Location:5192
    HLH; Helix-loop-helix domain, found in specific DNA- binding proteins that act as transcription factors; 60-100 amino acids long. A DNA-binding basic region is followed by two alpha-helices separated by a variable loop region; HLH forms homo- and heterodimers, ...

RefSeqs of Annotated Genomes: Xenopus laevis Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Xenopus_laevis_v2 Primary Assembly

Genomic

  1. NC_030735.1 Reference Xenopus_laevis_v2 Primary Assembly

    Range
    72506961..72512077
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
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