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ferry3.L FERRY endosomal RAB5 effector complex subunit 3 L homeolog [ Xenopus laevis (African clawed frog) ]

Gene ID: 379131, updated on 11-Apr-2024

Summary

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Official Symbol
ferry3.L
Official Full Name
FERRY endosomal RAB5 effector complex subunit 3 L homeolog
Primary source
Xenbase:XB-GENE-994288
Locus tag
XELAEV_18016810mg
See related
EnsemblRapid:ENSXLAG00005001082
Gene type
protein coding
RefSeq status
PREDICTED
Organism
Xenopus laevis
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Amphibia; Batrachia; Anura; Pipoidea; Pipidae; Xenopodinae; Xenopus; Xenopus
Also known as
c12orf4; c12orf4.L; c3h12orf4.L
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Genomic context

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Location:
chromosome: 3L
Exon count:
15
Annotation release Status Assembly Chr Location
101 current Xenopus_laevis_v10.1 (GCF_017654675.1) 3L NC_054375.1 (23612268..23643632, complement)
100 previous assembly Xenopus_laevis_v2 (GCF_001663975.1) 3L NC_030728.1 (7795793..7827202)

Chromosome 3L - NC_054375.1Genomic Context describing neighboring genes Neighboring gene fibroblast growth factor 6 L homeolog Neighboring gene uncharacterized LOC108710782 Neighboring gene solute carrier family 45 member 3 L homeolog Neighboring gene speedy protein 1-A-like Neighboring gene uncharacterized LOC108710780

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Genetic and genomic tools for Xenopus research: The NIH Xenopus initiative. Klein SL, et al. Dev Dyn, 2002 Dec. PMID 12454917
  2. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Strausberg RL, et al. Proc Natl Acad Sci U S A, 2002 Dec 24. PMID 12477932, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Clone Names

  • MGC53313

Gene Ontology Provided by Xenbase

Process Evidence Code Pubs
acts_upstream_of_or_within regulation of mast cell degranulation IEA
Inferred from Electronic Annotation
more info
  
Component Evidence Code Pubs
located_in cytoplasm IEA
Inferred from Electronic Annotation
more info
  

General protein information

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Preferred Names
uncharacterized protein LOC379131
Names
chromosome 3 C12orf4 homolog L homeolog

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001085975.1 → NP_001079444.1  uncharacterized protein LOC379131

    See identical proteins and their annotated locations for NP_001079444.1

    Status: PREDICTED

    Source sequence(s)
    BC042292
    UniProtKB/TrEMBL
    A0A974DC44, Q8AVG5
    Related
    ENSXLAP00005003260.1, ENSXLAT00005003322.1
    Conserved Domains (1) summary
    pfam10154
    Location:41 → 546
    DUF2362; Uncharacterized conserved protein (DUF2362)

RefSeqs of Annotated Genomes: Xenopus laevis Annotation Release 101 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Xenopus_laevis_v10.1 Primary Assembly

Genomic

  1. NC_054375.1 Reference Xenopus_laevis_v10.1 Primary Assembly

    Range
    23612268..23643632 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_018250617.2 → XP_018106106.1  uncharacterized protein LOC379131 isoform X1

    UniProtKB/TrEMBL
    A0A8J0UMV9

  2. XM_018250616.2 → XP_018106105.1  uncharacterized protein LOC379131 isoform X1

    UniProtKB/TrEMBL
    A0A8J0UMV9

  3. XM_018250615.2 → XP_018106104.1  uncharacterized protein LOC379131 isoform X1

    UniProtKB/TrEMBL
    A0A8J0UMV9

  4. XM_018250618.2 → XP_018106107.1  uncharacterized protein LOC379131 isoform X2

    UniProtKB/TrEMBL
    A0A974DC44, Q8AVG5
Nucleotide Protein Strain
Heading Accession and Version

Gene LinkOut

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