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abat 4-aminobutyrate aminotransferase [ Danio rerio (zebrafish) ]

Gene ID: 378968, updated on 8-Dec-2018

Summary

Official Symbol
abatprovided by ZNC
Official Full Name
4-aminobutyrate aminotransferaseprovided by ZNC
Primary source
ZFIN:ZDB-GENE-031006-4
See related
Ensembl:ENSDARG00000006031
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Danio rerio
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Cyprinidae; Danio
Also known as
cb880; fj82a01; wu:fj82a01
Orthologs

Genomic context

See abat in Genome Data Viewer
Location:
chromosome: 3
Exon count:
16
Annotation release Status Assembly Chr Location
106 current GRCz11 (GCF_000002035.6) 3 NC_007114.7 (27836067..27880303, complement)
105 previous assembly GRCz10 (GCF_000002035.5) 3 NC_007114.6 (27703093..27749461, complement)

Chromosome 3 - NC_007114.7Genomic Context describing neighboring genes Neighboring gene N-acetyltransferase 15 (GCN5-related, putative) Neighboring gene calcium regulated heat stable protein 1 Neighboring gene methyltransferase like 22 Neighboring gene uncharacterized LOC103910254 Neighboring gene uncharacterized LOC103910253

Genomic regions, transcripts, and products

Pathways from BioSystems

Interactions

Products Interactant Other Gene Complex Source Pubs Description

General gene information

Markers

Homology

Gene Ontology Provided by ZFIN

Function Evidence Code Pubs
4-aminobutyrate transaminase activity IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
4-aminobutyrate transaminase activity IEA
Inferred from Electronic Annotation
more info
 
catalytic activity IEA
Inferred from Electronic Annotation
more info
 
pyridoxal phosphate binding IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
pyridoxal phosphate binding IEA
Inferred from Electronic Annotation
more info
 
transaminase activity IEA
Inferred from Electronic Annotation
more info
 
transferase activity IEA
Inferred from Electronic Annotation
more info
 
Process Evidence Code Pubs
gamma-aminobutyric acid catabolic process IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
gamma-aminobutyric acid metabolic process IEA
Inferred from Electronic Annotation
more info
 
Component Evidence Code Pubs
mitochondrion IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 

General protein information

Preferred Names
4-aminobutyrate aminotransferase, mitochondrial
Names
GABA-T
NP_958906.2

NCBI Reference Sequences (RefSeq)

RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_201498.2NP_958906.2  4-aminobutyrate aminotransferase, mitochondrial

    See identical proteins and their annotated locations for NP_958906.2

    Status: VALIDATED

    Source sequence(s)
    CU464204, EH544013
    UniProtKB/TrEMBL
    I3IRW7
    Related
    ENSDARP00000125625.1, ENSDART00000151404.2
    Conserved Domains (2) summary
    COG0160
    Location:42500
    GabT; 4-aminobutyrate aminotransferase or related aminotransferase [Amino acid transport and metabolism]
    cl18945
    Location:38496
    AAT_I; Aspartate aminotransferase (AAT) superfamily (fold type I) of pyridoxal phosphate (PLP)-dependent enzymes. PLP combines with an alpha-amino acid to form a compound called a Schiff base or aldimine intermediate, which depending on the reaction, is the ...

RefSeqs of Annotated Genomes: Danio rerio Annotation Release 106 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCz11 Primary Assembly

Genomic

  1. NC_007114.7 Reference GRCz11 Primary Assembly

    Range
    27836067..27880303 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
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