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fbxl3a F-box and leucine-rich repeat protein 3a [ Danio rerio (zebrafish) ]

Gene ID: 378451, updated on 10-Oct-2019

Summary

Official Symbol
fbxl3aprovided by ZNC
Official Full Name
F-box and leucine-rich repeat protein 3aprovided by ZNC
Primary source
ZFIN:ZDB-GENE-030912-5
See related
Ensembl:ENSDARG00000103505
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Danio rerio
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Cyprinidae; Danio
Also known as
im:7153024; zgc:103721
Orthologs

Genomic context

See fbxl3a in Genome Data Viewer
Location:
chromosome: 9
Exon count:
6
Annotation release Status Assembly Chr Location
106 current GRCz11 (GCF_000002035.6) 9 NC_007120.7 (16867194..16877588, complement)
105 previous assembly GRCz10 (GCF_000002035.5) 9 NC_007120.6 (16859482..16870077, complement)
103 previous assembly Zv9 (GCF_000002035.4) 9 NC_007120.5 (17160028..17169809, complement)

Chromosome 9 - NC_007120.7Genomic Context describing neighboring genes Neighboring gene radial spoke head component 1 Neighboring gene CLN5 intracellular trafficking protein Neighboring gene MYC binding protein 2 Neighboring gene uncharacterized LOC101887044 Neighboring gene sciellin

Genomic regions, transcripts, and products

Pathways from BioSystems

General gene information

Homology

Gene Ontology Provided by ZFIN

Function Evidence Code Pubs
contributes_to ubiquitin protein ligase activity IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
Process Evidence Code Pubs
G2/M transition of mitotic cell cycle IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
SCF-dependent proteasomal ubiquitin-dependent protein catabolic process IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
entrainment of circadian clock by photoperiod IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
regulation of cell cycle IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
Component Evidence Code Pubs
SCF ubiquitin ligase complex IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
cytosol IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
nucleus IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 

General protein information

Preferred Names
F-box/LRR-repeat protein 3
Names
F-box/LRR-repeat protein 3-like

NCBI Reference Sequences (RefSeq)

RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001005773.3NP_001005773.3  F-box/LRR-repeat protein 3

    Status: VALIDATED

    Source sequence(s)
    CT573248
    Related
    ENSDARP00000136592.1, ENSDART00000161105.2
    Conserved Domains (2) summary
    sd00034
    Location:178203
    LRR_AMN1; leucine-rich repeat [structural motif]
    pfam12937
    Location:4081
    F-box-like; F-box-like

RefSeqs of Annotated Genomes: Danio rerio Annotation Release 106 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCz11 Primary Assembly

Genomic

  1. NC_007120.7 Reference GRCz11 Primary Assembly

    Range
    16867194..16877588 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_009304564.3XP_009302839.1  F-box/LRR-repeat protein 3 isoform X1

    See identical proteins and their annotated locations for XP_009302839.1

    UniProtKB/TrEMBL
    Q7T162
    Related
    ENSDARP00000133135.1, ENSDART00000160869.2
    Conserved Domains (2) summary
    sd00034
    Location:178203
    LRR_AMN1; leucine-rich repeat [structural motif]
    pfam12937
    Location:4081
    F-box-like; F-box-like

Reference GRCz11 ALT_DRER_TU_1

Genomic

  1. NW_018394745.1 Reference GRCz11 ALT_DRER_TU_1

    Range
    44354..54135 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
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