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SDC4P syndecan 4 pseudogene [ Homo sapiens (human) ]

Gene ID: 376844, updated on 13-May-2022

Summary

Official Symbol
SDC4Pprovided by HGNC
Official Full Name
syndecan 4 pseudogeneprovided by HGNC
Primary source
HGNC:HGNC:18903
See related
AllianceGenome:HGNC:18903
Gene type
pseudo
RefSeq status
PROVISIONAL
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
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Genomic context

See SDC4P in Genome Data Viewer
Location:
22q12.2
Exon count:
1
Annotation release Status Assembly Chr Location
110 current GRCh38.p14 (GCF_000001405.40) 22 NC_000022.11 (30481290..30481756, complement)
110 current T2T-CHM13v2.0 (GCF_009914755.1) 22 NC_060946.1 (30944700..30945166, complement)
105.20220307 previous assembly GRCh37.p13 (GCF_000001405.25) 22 NC_000022.10 (30877277..30877743, complement)

Chromosome 22 - NC_000022.11Genomic Context describing neighboring genes Neighboring gene Sharpr-MPRA regulatory region 4237 Neighboring gene uncharacterized LOC105372991 Neighboring gene SEC14 like lipid binding 3 Neighboring gene uncharacterized LOC107985579 Neighboring gene SEC14 like lipid binding 4

Genomic regions, transcripts, and products

Phenotypes

EBI GWAS Catalog

Description
Genetic variants associated with breast size also influence breast cancer risk.
EBI GWAS Catalog

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

RNA

  1. NR_001580.1 RNA Sequence

    Status: PROVISIONAL

    Source sequence(s)
    AF520746

RefSeqs of Annotated Genomes: Homo sapiens Annotation Release 110 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000022.11 Reference GRCh38.p14 Primary Assembly

    Range
    30481290..30481756 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060946.1 Alternate T2T-CHM13v2.0

    Range
    30944700..30945166 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)