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gag gag protein [ Eastern chimpanzee simian foamy virus ]

Gene ID: 37620032, updated on 29-Jul-2022
Gene symbol
gag
Gene description
gag protein
Locus tag
D1U24_gp2
Gene type
protein coding
RNA name
gag protein
RefSeq status
PROVISIONAL
Organism
Eastern chimpanzee simian foamy virus (nat-host: Homo sapiens)
Lineage
Viruses; Riboviria; Pararnavirae; Artverviricota; Revtraviricetes; Ortervirales; Retroviridae; Spumaretrovirinae; Simiispumavirus
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Location:
clone: pHSRV13
Sequence:
NC_039025.1 (778..11801)

NC_039025.1Genomic Context describing neighboring genes Neighboring gene pol protein Neighboring gene envelope protein Neighboring gene tas protein Neighboring gene bel2 protein

Genomic Sequence:
NC_039025.1

Go to nucleotide: Graphics FASTA GenBank

Related articles in PubMed

  1. Sequence errors in foamy virus sequences in the GenBank database: resequencing of the prototypic foamy virus proviral plasmids. Wagner TC, et al. Arch Virol, 2017 Apr. PMID 28040837

GeneRIFs: Gene References Into Functions

Miscellaneous features

  • Loc: 9030-9056 Tas binding site
  • Loc: 9195 internal promoter transcriptional start site

misc_structure

  • Loc: 778-970
  • Loc: 971-1123

polyA_site

  • Loc: 11801
  • Loc: 970

regulatory

  • Loc: 11776-11781 regulatory_class = polyA_signal_sequence
  • Loc: 9164-9170 regulatory_class = TATA_box
  • Loc: 945-950 regulatory_class = polyA_signal_sequence
Preferred Names
gag protein

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_039025.1 Reference assembly

    Range
    778..11801
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. YP_009508550.1 gag protein [Eastern chimpanzee simian foamy virus]

    Status: PROVISIONAL

    UniProtKB/TrEMBL
    A0A1Q1N9V7
    Conserved Domains (1) summary
    pfam03276
    Location:9 → 617
    Gag_spuma; Spumavirus gag protein
Nucleotide Protein
Heading Accession and Version

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