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RBM43 RNA binding motif protein 43 [ Homo sapiens (human) ]

Gene ID: 375287, updated on 13-Mar-2020

Summary

Official Symbol
RBM43provided by HGNC
Official Full Name
RNA binding motif protein 43provided by HGNC
Primary source
HGNC:HGNC:24790
See related
Ensembl:ENSG00000184898
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Also known as
C2orf38
Expression
Ubiquitous expression in thyroid (RPKM 7.0), ovary (RPKM 6.7) and 25 other tissues See more
Orthologs

Genomic context

See RBM43 in Genome Data Viewer
Location:
2q23.3
Exon count:
4
Annotation release Status Assembly Chr Location
109.20200228 current GRCh38.p13 (GCF_000001405.39) 2 NC_000002.12 (151247940..151261863, complement)
105 previous assembly GRCh37.p13 (GCF_000001405.25) 2 NC_000002.11 (152104728..152118389, complement)

Chromosome 2 - NC_000002.12Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC107985826 Neighboring gene fatty acid binding protein 5 pseudogene 10 Neighboring gene N-myc and STAT interactor Neighboring gene uncharacterized LOC107985827

Genomic regions, transcripts, and products

Expression

  • Project title: HPA RNA-seq normal tissues
  • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
  • BioProject: PRJEB4337
  • Publication: PMID 24309898
  • Analysis date: Wed Apr 4 07:08:55 2018

Phenotypes

NHGRI GWAS Catalog

Description
A genome-wide association search for type 2 diabetes genes in African Americans.
NHGRI GWA Catalog
Genome-wide association study link novel loci to endometriosis.
NHGRI GWA Catalog

Interactions

Products Interactant Other Gene Complex Source Pubs Description

General gene information

Markers

Homology

Clone Names

  • FLJ45645

Gene Ontology Provided by GOA

Function Evidence Code Pubs
RNA binding IEA
Inferred from Electronic Annotation
more info
 

NCBI Reference Sequences (RefSeq)

RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_198557.3NP_940959.1  RNA-binding protein 43

    See identical proteins and their annotated locations for NP_940959.1

    Status: VALIDATED

    Source sequence(s)
    AC018731, BC136411, BX337439, DA658209
    Consensus CDS
    CCDS2191.1
    UniProtKB/Swiss-Prot
    Q6ZSC3
    Related
    ENSP00000331211.5, ENST00000331426.6
    Conserved Domains (1) summary
    cd12546
    Location:1593
    RRM_RBM43; RNA recognition motif in vertebrate RNA-binding protein 43 (RBM43)

RefSeqs of Annotated Genomes: Homo sapiens Updated Annotation Release 109.

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p13 Primary Assembly

Genomic

  1. NC_000002.12 Reference GRCh38.p13 Primary Assembly

    Range
    151247940..151261863 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
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