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STUM stum, mechanosensory transduction mediator homolog [ Homo sapiens (human) ]

Gene ID: 375057, updated on 13-Mar-2020

Summary

Official Symbol
STUMprovided by HGNC
Official Full Name
stum, mechanosensory transduction mediator homologprovided by HGNC
Primary source
HGNC:HGNC:30491
See related
Ensembl:ENSG00000203685
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Also known as
C1orf95
Expression
Biased expression in brain (RPKM 14.0), esophagus (RPKM 3.3) and 11 other tissues See more
Orthologs

Genomic context

See STUM in Genome Data Viewer
Location:
1q42.12
Exon count:
4
Annotation release Status Assembly Chr Location
109.20200228 current GRCh38.p13 (GCF_000001405.39) 1 NC_000001.11 (226548746..226609230)
105 previous assembly GRCh37.p13 (GCF_000001405.25) 1 NC_000001.10 (226736501..226796915)

Chromosome 1 - NC_000001.11Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC105373115 Neighboring gene uncharacterized LOC105373116 Neighboring gene inositol-trisphosphate 3-kinase B Neighboring gene ITPKB intronic transcript 1 Neighboring gene uncharacterized LOC105373117

Genomic regions, transcripts, and products

Expression

  • Project title: HPA RNA-seq normal tissues
  • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
  • BioProject: PRJEB4337
  • Publication: PMID 24309898
  • Analysis date: Wed Apr 4 07:08:55 2018

General gene information

Markers

Homology

Clone Names

  • DKFZp761P211

Gene Ontology Provided by GOA

Component Evidence Code Pubs
integral component of membrane IEA
Inferred from Electronic Annotation
more info
 

General protein information

Preferred Names
protein stum homolog
Names
stumble homolog

NCBI Reference Sequences (RefSeq)

RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001003665.4NP_001003665.1  protein stum homolog

    See identical proteins and their annotated locations for NP_001003665.1

    Status: VALIDATED

    Source sequence(s)
    AL134612, AL137507, AL357122, AL359704, AL365444
    Consensus CDS
    CCDS31044.1
    UniProtKB/Swiss-Prot
    Q69YW2
    Related
    ENSP00000355752.3, ENST00000366788.8
    Conserved Domains (1) summary
    pfam15795
    Location:44127
    Spec3; Ectodermal ciliogenesis protein

RefSeqs of Annotated Genomes: Homo sapiens Updated Annotation Release 109.

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p13 Primary Assembly

Genomic

  1. NC_000001.11 Reference GRCh38.p13 Primary Assembly

    Range
    226548746..226609230
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_011544183.3XP_011542485.1  protein stum homolog isoform X1

    See identical proteins and their annotated locations for XP_011542485.1

    Conserved Domains (1) summary
    pfam15795
    Location:44127
    Spec3; Ectodermal ciliogenesis protein
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