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WASH3P WASP family homolog 3, pseudogene [ Homo sapiens (human) ]

Gene ID: 374666, updated on 17-Jun-2019

Summary

Official Symbol
WASH3Pprovided by HGNC
Official Full Name
WASP family homolog 3, pseudogeneprovided by HGNC
Primary source
HGNC:HGNC:24362
Gene type
pseudo
RefSeq status
VALIDATED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Also known as
FAM39DP
Expression
Ubiquitous expression in testis (RPKM 26.3), spleen (RPKM 26.3) and 25 other tissues See more

Genomic context

See WASH3P in Genome Data Viewer
Location:
15q26.3
Exon count:
11
Annotation release Status Assembly Chr Location
109.20190607 current GRCh38.p13 (GCF_000001405.39) 15 NC_000015.10 (101960813..101976605)
105 previous assembly GRCh37.p13 (GCF_000001405.25) 15 NC_000015.9 (102501016..102516808)

Chromosome 15 - NC_000015.10Genomic Context describing neighboring genes Neighboring gene family with sequence similarity 138 member E Neighboring gene microRNA 1302-10 Neighboring gene microRNA 6859-3 Neighboring gene DEAD/H-box helicase 11 like 9

Genomic regions, transcripts, and products

Expression

  • Project title: HPA RNA-seq normal tissues
  • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
  • BioProject: PRJEB4337
  • Publication: PMID 24309898
  • Analysis date: Wed Apr 4 07:08:55 2018

Bibliography

Related articles in PubMed

GeneRIFs: Gene References Into FunctionsWhat's a GeneRIF?

Interactions

Products Interactant Other Gene Complex Source Pubs Description

General gene information

Markers

Other Names

  • WAS protein family homolog 3, pseudogene
  • family with sequence similarity 39, member D pseudogene

Clone Names

  • FLJ25222, FLJ57306, FLJ75027, FLJ77846, FLJ78059, MGC52000, MGC117230

Gene Ontology Provided by GOA

Function Evidence Code Pubs
actin binding IEA
Inferred from Electronic Annotation
more info
 
alpha-tubulin binding ISS
Inferred from Sequence or Structural Similarity
more info
 
Process Evidence Code Pubs
Arp2/3 complex-mediated actin nucleation IDA
Inferred from Direct Assay
more info
PubMed 
early endosome to late endosome transport IMP
Inferred from Mutant Phenotype
more info
PubMed 
endosomal transport ISS
Inferred from Sequence or Structural Similarity
more info
 
endosome organization IMP
Inferred from Mutant Phenotype
more info
PubMed 
protein targeting to lysosome IMP
Inferred from Mutant Phenotype
more info
PubMed 
retrograde transport, endosome to Golgi ISS
Inferred from Sequence or Structural Similarity
more info
 
Component Evidence Code Pubs
WASH complex ISS
Inferred from Sequence or Structural Similarity
more info
 
autophagosome IEA
Inferred from Electronic Annotation
more info
 
centriole IEA
Inferred from Electronic Annotation
more info
 
cytosol IEA
Inferred from Electronic Annotation
more info
 
early endosome IDA
Inferred from Direct Assay
more info
PubMed 
early endosome ISS
Inferred from Sequence or Structural Similarity
more info
 
early endosome membrane IEA
Inferred from Electronic Annotation
more info
 
filopodium IDA
Inferred from Direct Assay
more info
PubMed 
lamellipodium IDA
Inferred from Direct Assay
more info
PubMed 
recycling endosome IDA
Inferred from Direct Assay
more info
PubMed 
recycling endosome ISS
Inferred from Sequence or Structural Similarity
more info
 
recycling endosome membrane IEA
Inferred from Electronic Annotation
more info
 

NCBI Reference Sequences (RefSeq)

RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

RNA

  1. NR_003659.2 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AC140725, AK056232, AK057951, AW604905, BQ722707, BQ935819, BQ937971, DA065132

RefSeqs of Annotated Genomes: Homo sapiens Annotation Release 109

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p13 Primary Assembly

Genomic

  1. NC_000015.10 Reference GRCh38.p13 Primary Assembly

    Range
    101960813..101976605
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Reference GRCh38.p13 PATCHES

Genomic

  1. NW_021160015.1 Reference GRCh38.p13 PATCHES

    Range
    66950..82742
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Suppressed Reference Sequence(s)

The following Reference Sequences have been suppressed. Explain

  1. NM_199163.2: Suppressed sequence

    Description
    NM_199163.2: This RefSeq was permanently suppressed because it is now thought that this gene is a pseudogene.
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