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TEX9 testis expressed 9 [ Homo sapiens (human) ]

Gene ID: 374618, updated on 21-Dec-2019

Summary

Official Symbol
TEX9provided by HGNC
Official Full Name
testis expressed 9provided by HGNC
Primary source
HGNC:HGNC:29585
See related
Ensembl:ENSG00000151575
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Expression
Broad expression in testis (RPKM 5.0), thyroid (RPKM 4.2) and 23 other tissues See more
Orthologs

Genomic context

See TEX9 in Genome Data Viewer
Location:
15q21.3
Exon count:
18
Annotation release Status Assembly Chr Location
109.20191205 current GRCh38.p13 (GCF_000001405.39) 15 NC_000015.10 (56244043..56445997)
105 previous assembly GRCh37.p13 (GCF_000001405.25) 15 NC_000015.9 (56536207..56739032)

Chromosome 15 - NC_000015.10Genomic Context describing neighboring genes Neighboring gene CD24 molecule pseudogene 2 Neighboring gene regulatory factor X7 Neighboring gene hydroxyacyl-CoA dehydrogenase pseudogene Neighboring gene RNA, U6 small nuclear 1287, pseudogene Neighboring gene high mobility group box 1 pseudogene 33 Neighboring gene uncharacterized LOC105370831 Neighboring gene meiosis specific nuclear structural 1 Neighboring gene uncharacterized LOC105370832

Genomic regions, transcripts, and products

Expression

  • Project title: HPA RNA-seq normal tissues
  • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
  • BioProject: PRJEB4337
  • Publication: PMID 24309898
  • Analysis date: Wed Apr 4 07:08:55 2018

Phenotypes

NHGRI GWAS Catalog

Description
Clozapine-induced agranulocytosis is associated with rare HLA-DQB1 and HLA-B alleles.
NHGRI GWA Catalog
Common variants in left/right asymmetry genes and pathways are associated with relative hand skill.
NHGRI GWA Catalog

Interactions

Products Interactant Other Gene Complex Source Pubs Description

General gene information

Homology

Clone Names

  • MGC40181

Gene Ontology Provided by GOA

Function Evidence Code Pubs
protein binding IPI
Inferred from Physical Interaction
more info
PubMed 

General protein information

Preferred Names
testis-expressed protein 9
Names
testis-expressed sequence 9 protein

NCBI Reference Sequences (RefSeq)

RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001286449.1NP_001273378.1  testis-expressed protein 9 isoform 2

    See identical proteins and their annotated locations for NP_001273378.1

    Status: VALIDATED

    Description
    Transcript Variant: This variant (2) uses an alternate splice site in the 5' region and initiates translation at a downstream in-frame start codon, compared to variant 1. The encoded isoform (2) has a shorter N-terminus than isoform 1.
    Source sequence(s)
    AK294960, HY164049
    Consensus CDS
    CCDS66776.1
    UniProtKB/Swiss-Prot
    Q8N6V9
    Related
    ENSP00000438745.1, ENST00000537232.5
    Conserved Domains (1) summary
    cl24005
    Location:188266
    DUF2570; Protein of unknown function (DUF2570)
  2. NM_198524.2NP_940926.1  testis-expressed protein 9 isoform 1

    See identical proteins and their annotated locations for NP_940926.1

    Status: VALIDATED

    Description
    Transcript Variant: This variant (1) represents the shorter transcript and encodes the longer isoform (1).
    Source sequence(s)
    AK294960, BC028119, HY164049
    Consensus CDS
    CCDS10157.1
    UniProtKB/Swiss-Prot
    Q8N6V9
    UniProtKB/TrEMBL
    A0A0S2Z669
    Related
    ENSP00000342169.2, ENST00000352903.6
    Conserved Domains (1) summary
    cl25732
    Location:190348
    SMC_N; RecF/RecN/SMC N terminal domain

RefSeqs of Annotated Genomes: Homo sapiens Updated Annotation Release 109.20191205

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p13 Primary Assembly

Genomic

  1. NC_000015.10 Reference GRCh38.p13 Primary Assembly

    Range
    56244043..56445997
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_005254361.4XP_005254418.1  testis-expressed protein 9 isoform X4

    See identical proteins and their annotated locations for XP_005254418.1

    UniProtKB/Swiss-Prot
    Q8N6V9
    Conserved Domains (1) summary
    cl24005
    Location:188266
    DUF2570; Protein of unknown function (DUF2570)
  2. XM_011521530.3XP_011519832.1  testis-expressed protein 9 isoform X1

    See identical proteins and their annotated locations for XP_011519832.1

    UniProtKB/Swiss-Prot
    Q8N6V9
    UniProtKB/TrEMBL
    A0A0S2Z669
    Conserved Domains (1) summary
    cl25732
    Location:190348
    SMC_N; RecF/RecN/SMC N terminal domain
  3. XM_005254359.5XP_005254416.1  testis-expressed protein 9 isoform X1

    See identical proteins and their annotated locations for XP_005254416.1

    UniProtKB/Swiss-Prot
    Q8N6V9
    UniProtKB/TrEMBL
    A0A0S2Z669
    Conserved Domains (1) summary
    cl25732
    Location:190348
    SMC_N; RecF/RecN/SMC N terminal domain
  4. XM_017022160.2XP_016877649.1  testis-expressed protein 9 isoform X1

    UniProtKB/Swiss-Prot
    Q8N6V9
    UniProtKB/TrEMBL
    A0A0S2Z669
    Conserved Domains (1) summary
    cl25732
    Location:190348
    SMC_N; RecF/RecN/SMC N terminal domain
  5. XM_017022162.1XP_016877651.1  testis-expressed protein 9 isoform X3

  6. XM_017022161.1XP_016877650.1  testis-expressed protein 9 isoform X2

  7. XM_017022167.2XP_016877656.1  testis-expressed protein 9 isoform X6

  8. XM_017022164.2XP_016877653.1  testis-expressed protein 9 isoform X4

    UniProtKB/Swiss-Prot
    Q8N6V9
    Conserved Domains (1) summary
    cl24005
    Location:188266
    DUF2570; Protein of unknown function (DUF2570)
  9. XM_017022163.1XP_016877652.1  testis-expressed protein 9 isoform X4

    UniProtKB/Swiss-Prot
    Q8N6V9
    Conserved Domains (1) summary
    cl24005
    Location:188266
    DUF2570; Protein of unknown function (DUF2570)
  10. XM_017022166.1XP_016877655.1  testis-expressed protein 9 isoform X5

RNA

  1. XR_001751266.1 RNA Sequence

  2. XR_931809.2 RNA Sequence

  3. XR_001751267.2 RNA Sequence

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