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LOC374443 C-type lectin domain family 2 member D pseudogene [ Homo sapiens (human) ]

Gene ID: 374443, updated on 23-Nov-2021

Summary

Gene symbol
LOC374443
Gene description
C-type lectin domain family 2 member D pseudogene
See related
Ensembl:ENSG00000256594
Gene type
pseudo
RefSeq status
VALIDATED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Expression
Broad expression in lymph node (RPKM 5.9), appendix (RPKM 3.9) and 23 other tissues See more
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Genomic context

See LOC374443 in Genome Data Viewer
Location:
12p13.31
Exon count:
10
Annotation release Status Assembly Chr Location
109.20211119 current GRCh38.p13 (GCF_000001405.39) 12 NC_000012.12 (9617284..9658415)
105.20201022 previous assembly GRCh37.p13 (GCF_000001405.25) 12 NC_000012.11 (9769880..9811011)

Chromosome 12 - NC_000012.12Genomic Context describing neighboring genes Neighboring gene alpha-2-macroglobulin like 1 pseudogene Neighboring gene RAN binding protein 6 pseudogene Neighboring gene uncharacterized LOC107987174 Neighboring gene killer cell lectin like receptor B1 Neighboring gene RNA, U6 small nuclear 700, pseudogene Neighboring gene uncharacterized LOC105369728 Neighboring gene GOT2 pseudogene 3 Neighboring gene C-type lectin domain family 2 member D Neighboring gene long intergenic non-protein coding RNA 2390 Neighboring gene nucleophosmin 1 pseudogene 7

Genomic regions, transcripts, and products

Expression

  • Project title: HPA RNA-seq normal tissues
  • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
  • BioProject: PRJEB4337
  • Publication: PMID 24309898
  • Analysis date: Wed Apr 4 07:08:55 2018

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

RNA

  1. NR_002814.2 RNA Sequence

    Status: VALIDATED

    Description
    Transcript Variant: This variant (2) lacks an internal exon, compared to variant 1.
    Source sequence(s)
    AA713965, AC010186, AK096274
    Related
    ENST00000575094.5
  2. NR_046444.1 RNA Sequence

    Status: VALIDATED

    Description
    Transcript Variant: This variant (1) represents the longest transcript.
    Source sequence(s)
    AA713965, AC010186, BX110220
  3. NR_046445.1 RNA Sequence

    Status: VALIDATED

    Description
    Transcript Variant: This variant (3) differs in the 5' exon and internal exons, compared to variant 1.
    Source sequence(s)
    AA713965, AC010186, BP871964, BX436430
  4. NR_046446.1 RNA Sequence

    Status: VALIDATED

    Description
    Transcript Variant: This variant (4) differs in the 5' exon and internal exons, compared to variant 1.
    Source sequence(s)
    AA713965, AC010186, AK096274, BF128895, DR002819
  5. NR_046447.1 RNA Sequence

    Status: VALIDATED

    Description
    Transcript Variant: This variant (5) differs in the 5' exon and lacks an internal exon, compared to variant 1.
    Source sequence(s)
    AA713965, AC010186, AK096274, DA835472
  6. NR_046448.1 RNA Sequence

    Status: VALIDATED

    Description
    Transcript Variant: This variant (6) differs in the 5' exon and an internal exon, compared to variant 1.
    Source sequence(s)
    AA713965, AC010186, AY084051
  7. NR_046449.2 RNA Sequence

    Status: VALIDATED

    Description
    Transcript Variant: This variant (7) differs in the 5' exon and lacks an internal exon, compared to variant 1.
    Source sequence(s)
    AA713965, AC010186, AK096274, CD700936
  8. NR_046450.1 RNA Sequence

    Status: VALIDATED

    Description
    Transcript Variant: This variant (8) differs in the 5' exon and internal exons, compared to variant 1.
    Source sequence(s)
    AA713965, AC010186, BG754872
  9. NR_046451.1 RNA Sequence

    Status: VALIDATED

    Description
    Transcript Variant: This variant (9) differs in the 5' exon and lacks an internal exon, compared to variant 1.
    Source sequence(s)
    AA713965, AC010186, CD174827, DB131244

RefSeqs of Annotated Genomes: Homo sapiens Updated Annotation Release 109.20211119

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p13 Primary Assembly

Genomic

  1. NC_000012.12 Reference GRCh38.p13 Primary Assembly

    Range
    9617284..9658415
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
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