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These reference sequences exist independently of genome builds. Explain
These reference sequences are curated independently of the genome
annotation cycle, so their versions may not match the RefSeq versions in the current
genome build. Identify version mismatches by comparing the version of the RefSeq in
this section to the one reported in Genomic regions,
transcripts, and products above.
mRNA and Protein(s)
-
NM_001256508.1 → NP_001243437.1 carabin isoform 2
Status: VALIDATED
- Description
- Transcript Variant: This variant (2) uses two alternate splice sites and lacks an exon in the 3' coding region which results in a frameshift compared to variant 1. The resulting protein (isoform 2) is shorter and has a distinct C-terminus compared to isoform 1.
- Source sequence(s)
-
AP003419, BC035630, BU615963
- Consensus CDS
-
CCDS58150.1
- UniProtKB/Swiss-Prot
-
Q8IV04
- Related
- ENSP00000435543.1, ENST00000526387.5
- Conserved Domains (1) summary
-
- cl02495
Location:89 → 157
- RabGAP-TBC; Rab-GTPase-TBC domain
-
NM_001369492.1 → NP_001356421.1 carabin isoform 3
Status: VALIDATED
- Source sequence(s)
-
AP003419
- Conserved Domains (1) summary
-
- smart00164
Location:89 → 159
- TBC; Domain in Tre-2, BUB2p, and Cdc16p. Probable Rab-GAPs
-
NM_001369494.1 → NP_001356423.1 carabin isoform 4
Status: VALIDATED
- Source sequence(s)
-
AP003419
- Conserved Domains (1) summary
-
- pfam00566
Location:56 → 193
- RabGAP-TBC; Rab-GTPase-TBC domain
-
NM_001369495.1 → NP_001356424.1 carabin isoform 4
Status: VALIDATED
- Source sequence(s)
-
AP003419
- Conserved Domains (1) summary
-
- pfam00566
Location:56 → 193
- RabGAP-TBC; Rab-GTPase-TBC domain
-
NM_001369496.1 → NP_001356425.1 carabin isoform 1
Status: VALIDATED
- Source sequence(s)
-
AP003419
- Consensus CDS
-
CCDS8162.1
- UniProtKB/Swiss-Prot
- G3V1D6, Q8IV04
- Related
- ENSP00000443654.1, ENST00000542590.2
- Conserved Domains (1) summary
-
- smart00164
Location:89 → 294
- TBC; Domain in Tre-2, BUB2p, and Cdc16p. Probable Rab-GAPs
-
NM_001369497.1 → NP_001356426.1 carabin isoform 1
Status: VALIDATED
- Source sequence(s)
-
AP003419
- Consensus CDS
-
CCDS8162.1
- UniProtKB/Swiss-Prot
- G3V1D6, Q8IV04
- Conserved Domains (1) summary
-
- smart00164
Location:89 → 294
- TBC; Domain in Tre-2, BUB2p, and Cdc16p. Probable Rab-GAPs
-
NM_001369498.1 → NP_001356427.1 carabin isoform 5
Status: VALIDATED
- Source sequence(s)
-
AP003419
- Conserved Domains (1) summary
-
- smart00164
Location:89 → 302
- TBC; Domain in Tre-2, BUB2p, and Cdc16p. Probable Rab-GAPs
-
NM_198517.4 → NP_940919.1 carabin isoform 1
Status: VALIDATED
- Description
- Transcript Variant: This variant (1) encodes the longer protein (isoform 1).
- Source sequence(s)
-
AP003419
- Consensus CDS
-
CCDS8162.1
- UniProtKB/Swiss-Prot
- G3V1D6, Q8IV04
- Conserved Domains (1) summary
-
- smart00164
Location:89 → 294
- TBC; Domain in Tre-2, BUB2p, and Cdc16p. Probable Rab-GAPs
RNA
-
NR_046266.2 RNA Sequence
Status: VALIDATED
- Description
- Transcript Variant: This variant (3) contains an alternate 5' exon and uses an alternate splice site in an internal exon, compared to variant 1. This variant is represented as non-coding because the use of the 5'-most supported translational start codon, as used in variant 1, renders the transcript a candidate for nonsense-mediated mRNA decay (NMD).
- Source sequence(s)
-
AP003419
- Related
-
ENST00000529635.5
The following sections contain reference sequences that belong to a
specific genome build. Explain
This section includes genomic Reference
Sequences (RefSeqs) from all assemblies on which this gene is annotated, such as
RefSeqs for chromosomes and scaffolds (contigs) from both reference and alternate
assemblies. Model RNAs and proteins are also reported here.
Reference GRCh38.p14 Primary Assembly
Genomic
-
NC_000011.10 Reference GRCh38.p14 Primary Assembly
- Range
-
67403913..67410090
- Download
- GenBank, FASTA, Sequence Viewer (Graphics)
mRNA and Protein(s)
-
XM_006718538.5 → XP_006718601.1 carabin isoform X1
- UniProtKB/Swiss-Prot
- G3V1D6, Q8IV04
- Conserved Domains (1) summary
-
- smart00164
Location:89 → 294
- TBC; Domain in Tre-2, BUB2p, and Cdc16p. Probable Rab-GAPs
-
XM_006718539.5 → XP_006718602.1 carabin isoform X1
- UniProtKB/Swiss-Prot
- G3V1D6, Q8IV04
- Conserved Domains (1) summary
-
- smart00164
Location:89 → 294
- TBC; Domain in Tre-2, BUB2p, and Cdc16p. Probable Rab-GAPs
-
XM_047426914.1 → XP_047282870.1 carabin isoform X6
- Related
- ENSP00000310193.6, ENST00000312390.9
-
XM_047426910.1 → XP_047282866.1 carabin isoform X2
-
XM_047426909.1 → XP_047282865.1 carabin isoform X2
-
XM_047426913.1 → XP_047282869.1 carabin isoform X5
-
XM_011545002.3 → XP_011543304.1 carabin isoform X3
- Conserved Domains (1) summary
-
- smart00164
Location:89 → 280
- TBC; Domain in Tre-2, BUB2p, and Cdc16p. Probable Rab-GAPs
-
XM_047426911.1 → XP_047282867.1 carabin isoform X4
Alternate T2T-CHM13v2.0
Genomic
-
NC_060935.1 Alternate T2T-CHM13v2.0
- Range
-
67398028..67404205
- Download
- GenBank, FASTA, Sequence Viewer (Graphics)
mRNA and Protein(s)
-
XM_054368706.1 → XP_054224681.1 carabin isoform X1
- UniProtKB/Swiss-Prot
- G3V1D6, Q8IV04
-
XM_054368707.1 → XP_054224682.1 carabin isoform X1
- UniProtKB/Swiss-Prot
- G3V1D6, Q8IV04
-
XM_054368713.1 → XP_054224688.1 carabin isoform X6
-
XM_054368709.1 → XP_054224684.1 carabin isoform X2
-
XM_054368708.1 → XP_054224683.1 carabin isoform X2
-
XM_054368712.1 → XP_054224687.1 carabin isoform X5
-
XM_054368710.1 → XP_054224685.1 carabin isoform X3
-
XM_054368711.1 → XP_054224686.1 carabin isoform X4