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TMEM179B transmembrane protein 179B [ Homo sapiens (human) ]

Gene ID: 374395, updated on 1-Mar-2024

Summary

Official Symbol
TMEM179Bprovided by HGNC
Official Full Name
transmembrane protein 179Bprovided by HGNC
Primary source
HGNC:HGNC:33744
See related
Ensembl:ENSG00000185475 AllianceGenome:HGNC:33744
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Summary
Located in nuclear speck and nucleolus. [provided by Alliance of Genome Resources, Apr 2022]
Expression
Ubiquitous expression in prostate (RPKM 21.9), thyroid (RPKM 20.8) and 25 other tissues See more
Orthologs
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Genomic context

See TMEM179B in Genome Data Viewer
Location:
11q12.3
Exon count:
5
Annotation release Status Assembly Chr Location
RS_2023_10 current GRCh38.p14 (GCF_000001405.40) 11 NC_000011.10 (62787402..62790400)
RS_2023_10 current T2T-CHM13v2.0 (GCF_009914755.1) 11 NC_060935.1 (62776793..62779792)
105.20220307 previous assembly GRCh37.p13 (GCF_000001405.25) 11 NC_000011.9 (62554874..62557872)

Chromosome 11 - NC_000011.10Genomic Context describing neighboring genes Neighboring gene ATAC-STARR-seq lymphoblastoid active region 4844 Neighboring gene RNA polymerase II subunit G Neighboring gene ATAC-STARR-seq lymphoblastoid active region 4845 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 3429 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 4846 Neighboring gene transmembrane protein 223 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 4847 Neighboring gene TATA-box binding protein associated factor 6 like Neighboring gene ATAC-STARR-seq lymphoblastoid active region 4848 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 3430 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 4849 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 3431 Neighboring gene microRNA 6748 Neighboring gene microRNA 6514 Neighboring gene nuclear RNA export factor 1 Neighboring gene H3K27ac hESC enhancer GRCh37_chr11:62572705-62573204 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 4850 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 4851 Neighboring gene syntaxin 5 Neighboring gene RNA, U6 small nuclear 118, pseudogene

Genomic regions, transcripts, and products

Expression

  • Project title: HPA RNA-seq normal tissues
  • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
  • BioProject: PRJEB4337
  • Publication: PMID 24309898
  • Analysis date: Wed Apr 4 07:08:55 2018

Interactions

Products Interactant Other Gene Complex Source Pubs Description

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001363599.1NP_001350528.1  transmembrane protein 179B isoform 2 precursor

    Status: VALIDATED

    Source sequence(s)
    AP001160
    Consensus CDS
    CCDS91494.1
    UniProtKB/TrEMBL
    G3V185
    Related
    ENSP00000433055.1, ENST00000533861.5
  2. NM_001363600.1NP_001350529.1  transmembrane protein 179B isoform 3 precursor

    Status: VALIDATED

    Source sequence(s)
    AP001160
  3. NM_001363601.1NP_001350530.1  transmembrane protein 179B isoform 4

    Status: VALIDATED

    Source sequence(s)
    AP001160
  4. NM_199337.3NP_955369.1  transmembrane protein 179B isoform 1 precursor

    See identical proteins and their annotated locations for NP_955369.1

    Status: VALIDATED

    Source sequence(s)
    BC051355, BE439533, BM684628
    Consensus CDS
    CCDS8036.1
    UniProtKB/Swiss-Prot
    Q7Z7N9
    Related
    ENSP00000333697.3, ENST00000333449.9

RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2023_10

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000011.10 Reference GRCh38.p14 Primary Assembly

    Range
    62787402..62790400
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060935.1 Alternate T2T-CHM13v2.0

    Range
    62776793..62779792
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)