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SOX9 SRY-box 9 [ Gallus gallus (chicken) ]

Gene ID: 374148, updated on 5-Mar-2024

Summary

Symbol
SOX9provided by CGNC
Full Name
SRY-box 9provided by CGNC
Primary source
CGNC:49063
See related
Ensembl:ENSGALG00010029771
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Gallus gallus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; Coelurosauria; Aves; Neognathae; Galloanserae; Galliformes; Phasianidae; Phasianinae; Gallus
Also known as
SOX-9
Orthologs
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Genomic context

See SOX9 in Genome Data Viewer
Location:
chromosome: 18
Exon count:
3
Annotation release Status Assembly Chr Location
106 current bGalGal1.mat.broiler.GRCg7b (GCF_016699485.2) 18 NC_052549.1 (9420966..9425462)
106 current bGalGal1.pat.whiteleghornlayer.GRCg7w (GCF_016700215.2) 18 NC_052590.1 (9021131..9026197)

Chromosome 18 - NC_052549.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC101751181 Neighboring gene uncharacterized LOC107052240 Neighboring gene microRNA 1672 Neighboring gene uncharacterized LOC417447 Neighboring gene solute carrier family 39 member 11

Genomic regions, transcripts, and products

Bibliography

GeneRIFs: Gene References Into Functions

What's a GeneRIF?

Pathways from PubChem

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_204281.2NP_989612.1  transcription factor SOX-9

    See identical proteins and their annotated locations for NP_989612.1

    Status: PROVISIONAL

    Source sequence(s)
    JAENSK010000317
    UniProtKB/Swiss-Prot
    F1P307, O73668, P48434
    Related
    ENSGALP00010044718.1, ENSGALT00010072028.1
    Conserved Domains (2) summary
    cd01388
    Location:104174
    SOX-TCF_HMG-box; SOX-TCF_HMG-box, class I member of the HMG-box superfamily of DNA-binding proteins. These proteins contain a single HMG box, and bind the minor groove of DNA in a highly sequence-specific manner. Members include SRY and its homologs in insects and ...
    pfam12444
    Location:2294
    Sox_N; Sox developmental protein N terminal

RefSeqs of Annotated Genomes: Gallus gallus Annotation Release 106 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference bGalGal1.mat.broiler.GRCg7b Primary Assembly

Genomic

  1. NC_052549.1 Reference bGalGal1.mat.broiler.GRCg7b Primary Assembly

    Range
    9420966..9425462
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Alternate bGalGal1.pat.whiteleghornlayer.GRCg7w

Genomic

  1. NC_052590.1 Alternate bGalGal1.pat.whiteleghornlayer.GRCg7w

    Range
    9021131..9026197
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_046929245.1XP_046785201.1  transcription factor SOX-9 isoform X1