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IL1RL1 interleukin 1 receptor like 1 [ Gallus gallus (chicken) ]

Gene ID: 374136, updated on 3-Dec-2024
Official Symbol
IL1RL1provided by CGNC
Official Full Name
interleukin 1 receptor like 1provided by CGNC
Primary source
CGNC:12590
See related
Ensembl:ENSGALG00010013797
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Gallus gallus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; Coelurosauria; Aves; Neognathae; Galloanserae; Galliformes; Phasianidae; Phasianinae; Gallus
Also known as
ST2
Orthologs
human mouse all
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See IL1RL1 in Genome Data Viewer
Location:
chromosome: 1
Exon count:
12
Annotation release Status Assembly Chr Location
106 current bGalGal1.mat.broiler.GRCg7b (GCF_016699485.2) 1 NC_052532.1 (133981720..134004955)
106 current bGalGal1.pat.whiteleghornlayer.GRCg7w (GCF_016700215.2) 1 NC_052573.1 (133939857..133963063)

Chromosome 1 - NC_052532.1Genomic Context describing neighboring genes Neighboring gene interleukin 1 receptor type 1 Neighboring gene interleukin 1 receptor like 2 Neighboring gene interleukin 18 receptor 1 Neighboring gene interleukin 18 receptor accessory protein

Go to nucleotide: Graphics FASTA GenBank

Related articles in PubMed

  1. Molecular cloning of the chicken ST2 gene and a novel variant form of the ST2 gene product, ST2LV. Iwahana H, et al. Biochim Biophys Acta, 2004 Nov 24. PMID 15566939
  2. A comprehensive collection of chicken cDNAs. Boardman PE, et al. Curr Biol, 2002 Nov 19. PMID 12445392
  3. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  4. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables interleukin-1 receptor activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables interleukin-33 binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables interleukin-33 receptor activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in signal transduction IEA
Inferred from Electronic Annotation
more info
 PubMed 
Preferred Names
interleukin-1 receptor-like 1
NP_001019761.2
NP_001019762.1
NP_989606.2
XP_040555772.1
XP_046762362.1

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001024590.2 → NP_001019761.2  interleukin-1 receptor-like 1 isoform 3 precursor

    Status: VALIDATED

    Description
    Transcript Variant: This variant (3) lacks alternate exons in the coding region and has an alternate terminal exon compared to variant 1. The resulting protein (isoform 3) is shorter and has a distinct C-terminus compared to isoform 1.
    Source sequence(s)
    JAENSK010000025
    UniProtKB/TrEMBL
    A0A8V0YNN7, Q9DEE3
    Related
    ENSGALP00010019594.1, ENSGALT00010033154.1
    Conserved Domains (3) summary
    PHA02785
    Location:2 → 260
    PHA02785; IL-beta-binding protein; Provisional
    cd00096
    Location:280 → 284
    Ig; Ig strand E [structural motif]
    cl11960
    Location:280 → 314
    Ig; Immunoglobulin domain

  2. NM_001024591.2 → NP_001019762.1  interleukin-1 receptor-like 1 isoform LV precursor

    See identical proteins and their annotated locations for NP_001019762.1

    Status: VALIDATED

    Description
    Transcript Variant: This variant (2) lacks an alternate in-frame exon in the coding region compared to variant 1. The resulting protein (isoform 2, also known as ST2LV) is shorter compared to isoform 1.
    Source sequence(s)
    AB041739, BU377731, JAENSK010000025
    UniProtKB/TrEMBL
    Q9DEE2, Q9DEE4
    Related
    ENSGALP00010019602.1, ENSGALT00010033174.1
    Conserved Domains (5) summary
    cd00096
    Location:228 → 312
    Ig; Immunoglobulin domain
    cd05757
    Location:114 → 197
    Ig2_IL1R_like; Second immunoglobulin (Ig)-like domain of interleukin-1 receptor (IL1R) and similar proteins
    smart00255
    Location:323 → 475
    TIR; Toll - interleukin 1 - resistance
    smart00410
    Location:20 → 96
    IG_like; Immunoglobulin like
    cl11960
    Location:27 → 104
    Ig; Immunoglobulin domain

  3. NM_204275.3 → NP_989606.2  interleukin-1 receptor-like 1 isoform L precursor

    Status: VALIDATED

    Description
    Transcript Variant: This variant (1) represents the longest transcript and encodes the longest protein (isoform 1, also known as ST2L).
    Source sequence(s)
    JAENSK010000025
    UniProtKB/TrEMBL
    A0A8V0YLX2, Q9DEE1
    Related
    ENSGALP00010019608.1, ENSGALT00010033183.1
    Conserved Domains (4) summary
    PHA02785
    Location:2 → 260
    PHA02785; IL-beta-binding protein; Provisional
    smart00255
    Location:370 → 522
    TIR; Toll - interleukin 1 - resistance
    cd00096
    Location:280 → 284
    Ig; Ig strand E [structural motif]
    cl11960
    Location:280 → 314
    Ig; Immunoglobulin domain

RefSeqs of Annotated Genomes: Gallus gallus Annotation Release 106 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference bGalGal1.mat.broiler.GRCg7b Primary Assembly

Genomic

  1. NC_052532.1 Reference bGalGal1.mat.broiler.GRCg7b Primary Assembly

    Range
    133981720..134004955
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_040699838.2 → XP_040555772.1  interleukin-1 receptor-like 1 isoform X1

    UniProtKB/TrEMBL
    Q9DEE1
    Conserved Domains (4) summary
    PHA02785
    Location:2 → 260
    PHA02785; IL-beta-binding protein; Provisional
    smart00255
    Location:369 → 521
    TIR; Toll - interleukin 1 - resistance
    cd00096
    Location:295 → 302
    Ig; Ig strand F [structural motif]
    cl11960
    Location:280 → 314
    Ig; Immunoglobulin domain

Alternate bGalGal1.pat.whiteleghornlayer.GRCg7w

Genomic

  1. NC_052573.1 Alternate bGalGal1.pat.whiteleghornlayer.GRCg7w

    Range
    133939857..133963063
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_046906406.1 → XP_046762362.1  interleukin-1 receptor-like 1 isoform X1

    UniProtKB/TrEMBL
    Q9DEE5
Nucleotide Protein Strain
Heading Accession and Version

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