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per1.L period circadian regulator 1 L homeolog [ Xenopus laevis (African clawed frog) ]

Gene ID: 373754, updated on 16-Oct-2017

Summary

Official Symbol
per1.L
Official Full Name
period circadian regulator 1 L homeolog
Primary source
Xenbase:XB-GENE-865927
Locus tag
XELAEV_18019212mg
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Xenopus laevis
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Amphibia; Batrachia; Anura; Pipoidea; Pipidae; Xenopodinae; Xenopus; Xenopus
Also known as
per1; xPer1; per1-A; period1

Genomic context

See per1.L in Genome Data Viewer
Location:
chromosome: 3L
Exon count:
25
Annotation release Status Assembly Chr Location
100 current Xenopus_laevis_v2 (GCF_001663975.1) 3L NC_030728.1 (136330678..136354073)

Chromosome 3L - NC_030728.1Genomic Context describing neighboring genes Neighboring gene aurora kinase B L homeolog Neighboring gene vesicle associated membrane protein 2 L homeolog Neighboring gene transfer RNA leucine (anticodon AAG) Neighboring gene transfer RNA proline (anticodon UGG)

Genomic regions, transcripts, and products

Genomic Sequence:
NC_030728.1 Chromosome 3L Reference Xenopus_laevis_v2 Primary Assembly

Pathways from BioSystems

  • Herpes simplex infection, organism-specific biosystem (from KEGG)
    Herpes simplex infection, organism-specific biosystemHerpes simplex virus (HSV) infections are very common worldwide, with the prevalence of HSV-1 reaching up to 80%-90%. Primary infection with HSV takes place in the mucosa, followed by the establishme...
  • Herpes simplex infection, conserved biosystem (from KEGG)
    Herpes simplex infection, conserved biosystemHerpes simplex virus (HSV) infections are very common worldwide, with the prevalence of HSV-1 reaching up to 80%-90%. Primary infection with HSV takes place in the mucosa, followed by the establishme...

General protein information

Preferred Names
period circadian clock 1 L homeolog; period circadian regulator 1 L homeolog
Names
period homolog 1

NCBI Reference Sequences (RefSeq)

RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001085703.2NP_001079172.2  period circadian regulator 1 L homeolog

    Status: PROVISIONAL

    Source sequence(s)
    AF250547, AY340103
    UniProtKB/TrEMBL
    Q7SZV2, Q9DFU8
    Conserved Domains (3) summary
    cd00130
    Location:344446
    PAS; PAS domain; PAS motifs appear in archaea, eubacteria and eukarya. Probably the most surprising identification of a PAS domain was that in EAG-like K+-channels. PAS domains have been found to bind ligands, and to act as sensors for light and oxygen in ...
    pfam08447
    Location:358442
    PAS_3; PAS fold
    pfam12114
    Location:10511208
    Period_C; Period protein 2/3C-terminal region

RefSeqs of Annotated Genomes: Xenopus laevis Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Xenopus_laevis_v2 Primary Assembly

Genomic

  1. NC_030728.1 Reference Xenopus_laevis_v2 Primary Assembly

    Range
    136330678..136354073
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_018250602.1XP_018106091.1  period circadian clock 1 L homeolog isoform X1

    UniProtKB/TrEMBL
    A0A1L8H3E8
  2. XM_018250604.1XP_018106093.1  period circadian clock 1 L homeolog isoform X2

  3. XM_018250601.1XP_018106090.1  period circadian clock 1 L homeolog isoform X1

    UniProtKB/TrEMBL
    A0A1L8H3E8
  4. XM_018250603.1XP_018106092.1  period circadian clock 1 L homeolog isoform X1

    UniProtKB/TrEMBL
    A0A1L8H3E8
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