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ivd isovaleryl-CoA dehydrogenase [ Danio rerio (zebrafish) ]

Gene ID: 368775, updated on 16-Oct-2021

Summary

Official Symbol
ivdprovided by ZNC
Official Full Name
isovaleryl-CoA dehydrogenaseprovided by ZNC
Primary source
ZFIN:ZDB-GENE-030616-262
See related
Ensembl:ENSDARG00000042853
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Danio rerio
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Danionidae; Danioninae; Danio
Also known as
sb:cb425; wu:fb34d07; si:dz181p14.1
Orthologs
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Genomic context

See ivd in Genome Data Viewer
Location:
chromosome: 17
Exon count:
12
Annotation release Status Assembly Chr Location
106 current GRCz11 (GCF_000002035.6) 17 NC_007128.7 (31346560..31360914, complement)
105 previous assembly GRCz10 (GCF_000002035.5) 17 NC_007128.6 (31329597..31343951, complement)
103 previous assembly Zv9 (GCF_000002035.4) 17 NC_007128.5 (31405670..31420024, complement)

Chromosome 17 - NC_007128.7Genomic Context describing neighboring genes Neighboring gene prolactin releasing hormone 2 receptor Neighboring gene bromo adjacent homology domain containing 1 Neighboring gene inositol-trisphosphate 3-kinase A Neighboring gene leukocyte receptor tyrosine kinase

Genomic regions, transcripts, and products

Expression

  • Project title: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
  • Description: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
  • BioProject: PRJEB1986
  • Analysis date: Fri Dec 8 19:48:10 2017

General gene information

Markers

Homology

Gene Ontology Provided by ZFIN

Function Evidence Code Pubs
enables acyl-CoA dehydrogenase activity IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
enables acyl-CoA dehydrogenase activity IEA
Inferred from Electronic Annotation
more info
 
enables flavin adenine dinucleotide binding IEA
Inferred from Electronic Annotation
more info
 
enables isovaleryl-CoA dehydrogenase activity IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
enables isovaleryl-CoA dehydrogenase activity IEA
Inferred from Electronic Annotation
more info
 
enables oxidoreductase activity IEA
Inferred from Electronic Annotation
more info
 
enables oxidoreductase activity, acting on the CH-CH group of donors IEA
Inferred from Electronic Annotation
more info
 
Process Evidence Code Pubs
involved_in leucine catabolic process IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
involved_in leucine catabolic process IEA
Inferred from Electronic Annotation
more info
 
Component Evidence Code Pubs
is_active_in mitochondrion IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 

General protein information

Preferred Names
isovaleryl-CoA dehydrogenase, mitochondrial
Names
Coenzyme A
isovaleryl Coenzyme A dehydrogenase
NP_958899.1

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_201491.1NP_958899.1  isovaleryl-CoA dehydrogenase, mitochondrial

    See identical proteins and their annotated locations for NP_958899.1

    Status: PROVISIONAL

    Source sequence(s)
    BC045426
    UniProtKB/TrEMBL
    Q7ZTH9
    Related
    ENSDARP00000062893.3, ENSDART00000062894.5
    Conserved Domains (2) summary
    cd01156
    Location:38415
    IVD; Isovaleryl-CoA dehydrogenase
    PLN02519
    Location:39411
    PLN02519; isovaleryl-CoA dehydrogenase

RefSeqs of Annotated Genomes: Danio rerio Annotation Release 106 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCz11 Primary Assembly

Genomic

  1. NC_007128.7 Reference GRCz11 Primary Assembly

    Range
    31346560..31360914 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Reference GRCz11 ALT_DRER_TU_1

Genomic

  1. NW_018394997.1 Reference GRCz11 ALT_DRER_TU_1

    Range
    138669..153251 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
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