parapinopsinb parapinopsin b [Danio rerio (zebrafish)] - Gene

Summary

Official Symbol: parapinopsinbprovided by ZNC
Official Full Name: parapinopsin bprovided by ZNC
Primary source: ZFIN:ZDB-GENE-030616-134
See related: Ensembl:ENSDARG00000044672 AllianceGenome:ZFIN:ZDB-GENE-030616-134
Gene type: protein coding
RefSeq status: VALIDATED
Organism: Danio rerio
Lineage: Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Danionidae; Danioninae; Danio
Also known as: pp2; opsin; vispp; si:dz136d19.2; si:busm1-136d19.2
Summary: Predicted to enable G protein-coupled photoreceptor activity. Acts upstream of or within absorption of visible light. Predicted to be located in membrane. Predicted to be active in photoreceptor outer segment and plasma membrane. Is expressed in several structures, including endocrine system; fin; gill; heart; and integument. [provided by Alliance of Genome Resources, Jul 2025]
Orthologs: all
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Genomic context

Location:: chromosome: 11

Exon count:: 4

Annotation release	Status	Assembly	Chr	Location
RS_2025_04	current	GRCz12tu (GCF_049306965.1)	11	NC_133186.1 (39125959..39135788)
RS_2024_08	previous assembly	GRCz11 (GCF_000002035.6)	11	NC_007122.7 (36777613..36785073)

Chromosome 11 - NC_133186.1 Genomic Context describing neighboring genes

Genomic regions, transcripts, and products

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Genomic Sequence:

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Expression

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See details

Project title: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
Description: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
BioProject: PRJEB1986
Analysis date: Fri Dec 8 19:48:10 2017

Bibliography

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GeneRIFs: Gene References Into Functions

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General gene information

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General protein information

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Preferred Names: parapinopsin b

Names: parapinopsin-2; visible light sensitive parapinopsin

NP_001005312.1

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

NM_001441405.1 → NP_001428334.1 parapinopsin b

Status: VALIDATED

Source sequence(s)

JBMGRA010000011

UniProtKB/TrEMBL

A0AB72VFP7

RefSeqs of Annotated Genomes: GCF_049306965.1-RS_2025_04

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCz12tu Primary Assembly

Genomic

NC_133186.1 Reference GRCz12tu Primary Assembly

Range

39125959..39135788

Download

GenBank, FASTA, Sequence Viewer (Graphics)

Suppressed Reference Sequence(s)

The following Reference Sequences have been suppressed. Explain

NM_001005312.1: Suppressed sequence

Description

NM_001005312.1: This RefSeq was removed because currently there is insufficient support for the transcript and the protein.