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Atg9 Autophagy-related 9 [ Drosophila melanogaster (fruit fly) ]

Gene ID: 36821, updated on 19-Aug-2018

Summary

Official Symbol
Atg9provided by FlyBase
Official Full Name
Autophagy-related 9provided by FlyBase
Primary source
FLYBASE:FBgn0034110
Locus tag
Dmel_CG3615
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Drosophila melanogaster (old-lineage: Eukaryota; Metazoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Diptera; Brachycera; Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora)
Lineage
Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Holometabola; Diptera; Brachycera; Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora
Also known as
atg9; ATG9; CG3615; dAtg9; Dmel\CG3615

Genomic context

See Atg9 in Genome Data Viewer
Location:
53B1-53B2; 2-79 cM
Exon count:
1
Annotation release Status Assembly Chr Location
Release 6.13 current Release 6 plus ISO1 MT (GCF_000001215.4) 2R NT_033778.4 (16294400..16297232)
Release 5.57 previous assembly Release 5 (GCF_000001215.2) 2R NT_033778.3 (12181905..12184737)

Chromosome 2R - NT_033778.4Genomic Context describing neighboring genes Neighboring gene ncRNA Neighboring gene Juvenile hormone-inducible protein 26 Neighboring gene uncharacterized protein Neighboring gene uncharacterized protein Neighboring gene uncharacterized protein Neighboring gene ncRNA Neighboring gene NADPH oxidase Neighboring gene uncharacterized protein

Genomic regions, transcripts, and products

Bibliography

GeneRIFs: Gene References Into FunctionsWhat's a GeneRIF?

Pathways from BioSystems

  • Autophagy - animal, organism-specific biosystem (from KEGG)
    Autophagy - animal, organism-specific biosystemAutophagy (or macroautophagy) is a cellular catabolic pathway involving in protein degradation, organelle turnover, and non-selective breakdown of cytoplasmic components, which is evolutionarily cons...
  • Autophagy - animal, conserved biosystem (from KEGG)
    Autophagy - animal, conserved biosystemAutophagy (or macroautophagy) is a cellular catabolic pathway involving in protein degradation, organelle turnover, and non-selective breakdown of cytoplasmic components, which is evolutionarily cons...
  • Autophagy - other, organism-specific biosystem (from KEGG)
    Autophagy - other, organism-specific biosystemAutophagy is a degradative pathway for the removal of cytoplasmic materials in eukaryotic cells, and is characterized by the formation of a double-membrane structure called the autophagosome, either ...
  • Autophagy - other, conserved biosystem (from KEGG)
    Autophagy - other, conserved biosystemAutophagy is a degradative pathway for the removal of cytoplasmic materials in eukaryotic cells, and is characterized by the formation of a double-membrane structure called the autophagosome, either ...
  • Cellular responses to stress, organism-specific biosystem (from REACTOME)
    Cellular responses to stress, organism-specific biosystemcomputationally inferred pathway (not manually curated)
  • Macroautophagy, organism-specific biosystem (from REACTOME)
    Macroautophagy, organism-specific biosystemcomputationally inferred pathway (not manually curated)
  • Mitophagy - animal, organism-specific biosystem (from KEGG)
    Mitophagy - animal, organism-specific biosystemMitochondria act as the energy powerhouse of the cell, and are essential for eukaryotic cells to grow and function normally. However, deleterious byproducts of oxidative phosphorylation process calle...
  • Mitophagy - animal, conserved biosystem (from KEGG)
    Mitophagy - animal, conserved biosystemMitochondria act as the energy powerhouse of the cell, and are essential for eukaryotic cells to grow and function normally. However, deleterious byproducts of oxidative phosphorylation process calle...

Interactions

Products Interactant Other Gene Complex Source Pubs Description

General gene information

Homology

Gene Ontology Provided by FlyBase

Function Evidence Code Pubs
molecular_function ND
No biological Data available
more info
 
Process Evidence Code Pubs
autophagosome assembly ISS
Inferred from Sequence or Structural Similarity
more info
 
autophagy IMP
Inferred from Mutant Phenotype
more info
PubMed 
cellular response to oxidative stress IMP
Inferred from Mutant Phenotype
more info
PubMed 
cellular response to starvation IMP
Inferred from Mutant Phenotype
more info
PubMed 
glycophagy IMP
Inferred from Mutant Phenotype
more info
PubMed 
intestinal epithelial structure maintenance IMP
Inferred from Mutant Phenotype
more info
PubMed 
larval midgut cell programmed cell death IMP
Inferred from Mutant Phenotype
more info
PubMed 
larval midgut histolysis IMP
Inferred from Mutant Phenotype
more info
PubMed 
negative regulation of TOR signaling IMP
Inferred from Mutant Phenotype
more info
PubMed 
positive regulation of JNK cascade IGI
Inferred from Genetic Interaction
more info
PubMed 
positive regulation of JNK cascade IMP
Inferred from Mutant Phenotype
more info
PubMed 
Component Evidence Code Pubs
cell junction IDA
Inferred from Direct Assay
more info
PubMed 
cytoplasm IDA
Inferred from Direct Assay
more info
PubMed 
integral component of membrane ISM
Inferred from Sequence Model
more info
 

General protein information

Preferred Names
Autophagy-related 9
Names
Atg9-PA
Atg9-PB
Autophagy-specific gene 9
CG3615-PA
CG3615-PB

NCBI Reference Sequences (RefSeq)

Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NT_033778.4 Reference assembly

    Range
    16294400..16297232
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_137270.4NP_611114.1  Autophagy-related 9, isoform A [Drosophila melanogaster]

    See identical proteins and their annotated locations for NP_611114.1

    Status: REVIEWED

    UniProtKB/TrEMBL
    Q7JQL5
    Related
    FBpp0086285.1, FBtr0087141
    Conserved Domains (1) summary
    pfam04109
    Location:219573
    APG9; Autophagy protein Apg9
  2. NM_001274094.2NP_001261023.1  Autophagy-related 9, isoform B [Drosophila melanogaster]

    See identical proteins and their annotated locations for NP_001261023.1

    Status: REVIEWED

    UniProtKB/TrEMBL
    A0A0B4KF86
    Related
    FBpp0302990.1, FBtr0329958
    Conserved Domains (1) summary
    pfam04109
    Location:219573
    APG9; Autophagy protein Apg9
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