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tra2 transformer 2 [ Drosophila melanogaster (fruit fly) ]

Gene ID: 36619, updated on 3-Sep-2017
Official Symbol
tra2provided by FlyBase
Official Full Name
transformer 2provided by FlyBase
Primary source
FLYBASE:FBgn0003742
Locus tag
Dmel_CG10128
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Drosophila melanogaster (old-lineage: Eukaryota; Metazoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Diptera; Brachycera; Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora)
Lineage
Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Holometabola; Diptera; Brachycera; Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora
Also known as
CG10128; Dmel\CG10128; TRA 2; tra-2; Tra-2; TRA-2; Tra2; TRA2
Location:
51B6-51B6; 2-70 cM
Exon count:
7
Annotation release Status Assembly Chr Location
Release 6.13 current Release 6 plus ISO1 MT (GCF_000001215.4) 2R NT_033778.4 (14602004..14604337, complement)
Release 5.57 previous assembly Release 5 (GCF_000001215.2) 2R NT_033778.3 (10489509..10491842, complement)

Chromosome 2R - NT_033778.4Genomic Context describing neighboring genes Neighboring gene tout-velu Neighboring gene Lamin C Neighboring gene CG12869 gene product from transcript CG12869-RA Neighboring gene small Cajal body-specific RNA : PsiU5-44 Neighboring gene RNA polymerase I subunit Neighboring gene Biogenesis of lysosome-related organelles complex 1, subunit 1 Neighboring gene CG12868 gene product from transcript CG12868-RB Neighboring gene CG33469 gene product from transcript CG33469-RB

GeneRIFs: Gene References Into FunctionsWhat's a GeneRIF?

Products Interactant Other Gene Complex Source Pubs Description

Markers

Gene Ontology Provided by FlyBase

Function Evidence Code Pubs
RNA binding NAS
Non-traceable Author Statement
more info
PubMed 
identical protein binding IPI
Inferred from Physical Interaction
more info
PubMed 
mRNA binding ISS
Inferred from Sequence or Structural Similarity
more info
PubMed 
pre-mRNA binding IDA
Inferred from Direct Assay
more info
PubMed 
protein binding IPI
Inferred from Physical Interaction
more info
PubMed 
Process Evidence Code Pubs
female sex determination IMP
Inferred from Mutant Phenotype
more info
PubMed 
female somatic sex determination TAS
Traceable Author Statement
more info
PubMed 
mRNA processing IMP
Inferred from Mutant Phenotype
more info
PubMed 
mRNA processing NAS
Non-traceable Author Statement
more info
PubMed 
mRNA splicing, via spliceosome IC
Inferred by Curator
more info
PubMed 
mRNA splicing, via spliceosome IDA
Inferred from Direct Assay
more info
PubMed 
mRNA splicing, via spliceosome NAS
Non-traceable Author Statement
more info
PubMed 
male somatic sex determination TAS
Traceable Author Statement
more info
PubMed 
regulation of alternative mRNA splicing, via spliceosome IDA
Inferred from Direct Assay
more info
PubMed 
regulation of alternative mRNA splicing, via spliceosome IMP
Inferred from Mutant Phenotype
more info
PubMed 
reproduction IMP
Inferred from Mutant Phenotype
more info
PubMed 
reproduction NAS
Non-traceable Author Statement
more info
PubMed 
sex determination NAS
Non-traceable Author Statement
more info
PubMed 
spermatogenesis NAS
Non-traceable Author Statement
more info
PubMed 
spliceosomal complex assembly NAS
Non-traceable Author Statement
more info
PubMed 
Component Evidence Code Pubs
precatalytic spliceosome IDA
Inferred from Direct Assay
more info
PubMed 
Preferred Names
CG10128 gene product from transcript CG10128-RA
Names
CG10128-PA
CG10128-PB
CG10128-PC
CG10128-PD
CG10128-PE
CG10128-PF
CG10128-PG
Transformer-2
tra2-PA
tra2-PB
tra2-PC
tra2-PD
tra2-PE
tra2-PF
tra2-PG
transformer 2
transformer2

Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NT_033778.4 Reference assembly

    Range
    14602004..14604337 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_057416.3NP_476764.1  transformer 2, isoform A [Drosophila melanogaster]

    See identical proteins and their annotated locations for NP_476764.1

    Status: REVIEWED

    UniProtKB/Swiss-Prot
    P19018
    Related
    FBpp0088562.1, FBtr0089617
    Conserved Domains (2) summary
    COG0724
    Location:74242
    RRM; RNA recognition motif (RRM) domain [Translation, ribosomal structure and biogenesis]
    cd12363
    Location:98175
    RRM_TRA2; RNA recognition motif in transformer-2 protein homolog TRA2-alpha, TRA2-beta and similar proteins
  2. NM_057415.3NP_476763.1  transformer 2, isoform B [Drosophila melanogaster]

    See identical proteins and their annotated locations for NP_476763.1

    Status: REVIEWED

    UniProtKB/Swiss-Prot
    P19018
    Related
    FBpp0088563.1, FBtr0089618
    Conserved Domains (1) summary
    cl17169
    Location:98133
    RRM_SF; RNA recognition motif (RRM) superfamily
  3. NM_057417.3NP_476765.1  transformer 2, isoform C [Drosophila melanogaster]

    See identical proteins and their annotated locations for NP_476765.1

    Status: REVIEWED

    UniProtKB/Swiss-Prot
    P19018
    Related
    FBpp0088564.1, FBtr0089619
    Conserved Domains (2) summary
    COG0724
    Location:36204
    RRM; RNA recognition motif (RRM) domain [Translation, ribosomal structure and biogenesis]
    cd12363
    Location:60137
    RRM_TRA2; RNA recognition motif in transformer-2 protein homolog TRA2-alpha, TRA2-beta and similar proteins
  4. NM_206113.2NP_995835.1  transformer 2, isoform F [Drosophila melanogaster]

    See identical proteins and their annotated locations for NP_995835.1

    Status: REVIEWED

    UniProtKB/Swiss-Prot
    P19018
    Related
    FBpp0088947.1, FBtr0089620
    Conserved Domains (2) summary
    COG0724
    Location:74242
    RRM; RNA recognition motif (RRM) domain [Translation, ribosomal structure and biogenesis]
    cd12363
    Location:98175
    RRM_TRA2; RNA recognition motif in transformer-2 protein homolog TRA2-alpha, TRA2-beta and similar proteins
  5. NM_206112.2NP_995834.1  transformer 2, isoform G [Drosophila melanogaster]

    See identical proteins and their annotated locations for NP_995834.1

    Status: REVIEWED

    UniProtKB/Swiss-Prot
    P19018
    Related
    FBpp0088946.1, FBtr0089621
    Conserved Domains (2) summary
    COG0724
    Location:74242
    RRM; RNA recognition motif (RRM) domain [Translation, ribosomal structure and biogenesis]
    cd12363
    Location:98175
    RRM_TRA2; RNA recognition motif in transformer-2 protein homolog TRA2-alpha, TRA2-beta and similar proteins
  6. NM_134280.1NP_599107.1  transformer 2, isoform D [Drosophila melanogaster]

    See identical proteins and their annotated locations for NP_599107.1

    Status: REVIEWED

    UniProtKB/Swiss-Prot
    P19018
    Related
    FBpp0088560.1, FBtr0089615
    Conserved Domains (2) summary
    COG0724
    Location:36204
    RRM; RNA recognition motif (RRM) domain [Translation, ribosomal structure and biogenesis]
    cd12363
    Location:60137
    RRM_TRA2; RNA recognition motif in transformer-2 protein homolog TRA2-alpha, TRA2-beta and similar proteins
  7. NM_057418.2NP_476766.1  transformer 2, isoform E [Drosophila melanogaster]

    See identical proteins and their annotated locations for NP_476766.1

    Status: REVIEWED

    UniProtKB/Swiss-Prot
    P19018
    Related
    FBpp0088561.1, FBtr0089616
    Conserved Domains (2) summary
    COG0724
    Location:3157
    RRM; RNA recognition motif (RRM) domain [Translation, ribosomal structure and biogenesis]
    cd12363
    Location:1390
    RRM_TRA2; RNA recognition motif in transformer-2 protein homolog TRA2-alpha, TRA2-beta and similar proteins
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