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pea peanuts [ Drosophila melanogaster (fruit fly) ]

Gene ID: 36561, updated on 28-Oct-2024

Summary

Official Symbol
peaprovided by FlyBase
Official Full Name
peanutsprovided by FlyBase
Primary source
FLYBASE:FBgn0086895
Locus tag
Dmel_CG8241
See related
AllianceGenome:FB:FBgn0086895
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Drosophila melanogaster
Lineage
Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Diptera; Brachycera; Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora
Also known as
cg8241; CG8241; Dmel\CG8241; prp22; Prp22
Summary
Predicted to enable RNA binding activity and RNA helicase activity. Involved in chromatin organization and oogenesis. Part of catalytic step 2 spliceosome and precatalytic spliceosome. Orthologous to human DHX8 (DEAH-box helicase 8). [provided by Alliance of Genome Resources, Oct 2024]
Orthologs
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Genomic context

See pea in Genome Data Viewer
Location:
50E1-50E1; 2-69 cM
Exon count:
2
Annotation release Status Assembly Chr Location
Release 6.54 current Release 6 plus ISO1 MT (GCF_000001215.4) 2R NT_033778.4 (14153153..14157106)
Release 5.57 previous assembly Release 5 (GCF_000001215.2) 2R NT_033778.3 (10040658..10044611)

Chromosome 2R - NT_033778.4Genomic Context describing neighboring genes Neighboring gene mir-989 stem loop Neighboring gene Reduction in Cnn dots 1 Neighboring gene uncharacterized protein Neighboring gene uncharacterized protein Neighboring gene Cysteinyl-tRNA synthetase, mitochondrial Neighboring gene O-fucosyltransferase 1

Genomic regions, transcripts, and products

Pathways from PubChem

Interactions

Products Interactant Other Gene Complex Source Pubs Description

General gene information

Gene Ontology Provided by FlyBase

Function Evidence Code Pubs
enables ATP binding IEA
Inferred from Electronic Annotation
more info
 
enables RNA binding IBA
Inferred from Biological aspect of Ancestor
more info
 
enables RNA helicase activity IBA
Inferred from Biological aspect of Ancestor
more info
 
enables RNA helicase activity IEA
Inferred from Electronic Annotation
more info
 
enables RNA helicase activity ISS
Inferred from Sequence or Structural Similarity
more info
PubMed 
enables nucleic acid binding IEA
Inferred from Electronic Annotation
more info
 
Component Evidence Code Pubs
part_of catalytic step 2 spliceosome HDA PubMed 
part_of catalytic step 2 spliceosome IBA
Inferred from Biological aspect of Ancestor
more info
 
located_in nucleus IC
Inferred by Curator
more info
PubMed 
part_of precatalytic spliceosome HDA PubMed 
part_of spliceosomal complex ISS
Inferred from Sequence or Structural Similarity
more info
PubMed 

General protein information

Preferred Names
peanuts
Names
CG8241-PA
pea-PA
NP_610928.1

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NT_033778.4 Reference assembly

    Range
    14153153..14157106
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_137084.3NP_610928.1  peanuts [Drosophila melanogaster]

    See identical proteins and their annotated locations for NP_610928.1

    Status: REVIEWED

    UniProtKB/Swiss-Prot
    A1Z9L3, Q8MSQ6
    Related
    FBpp0086647
    Conserved Domains (2) summary
    COG1643
    Location:5731221
    HrpA; HrpA-like RNA helicase [Translation, ribosomal structure and biogenesis]
    cd05684
    Location:285363
    S1_DHX8_helicase; S1_DHX8_helicase: The N-terminal S1 domain of human ATP-dependent RNA helicase DHX8, a DEAH (Asp-Glu-Ala-His) box polypeptide. The DEAH-box RNA helicases are thought to play key roles in pre-mRNA splicing and DHX8 facilitates nuclear export of spliced ...