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Cabp4 calcium binding protein 4 [ Rattus norvegicus (Norway rat) ]

Gene ID: 365394, updated on 21-Jul-2018

Summary

Official Symbol
Cabp4provided by RGD
Official Full Name
calcium binding protein 4provided by RGD
Primary source
RGD:1306083
See related
Ensembl:ENSRNOG00000022044
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Rattus norvegicus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Rattus
Expression
Biased expression in Spleen (RPKM 71.2), Thymus (RPKM 14.0) and 6 other tissues See more
Orthologs

Genomic context

See Cabp4 in Genome Data Viewer
Location:
1q43
Exon count:
6
Annotation release Status Assembly Chr Location
106 current Rnor_6.0 (GCF_000001895.5) 1 NC_005100.4 (219383452..219388009, complement)
104 previous assembly Rnor_5.0 (GCF_000001895.4) 1 NC_005100.3 (226254102..226259991, complement)

Chromosome 1 - NC_005100.4Genomic Context describing neighboring genes Neighboring gene aryl-hydrocarbon receptor-interacting protein Neighboring gene uncharacterized LOC108349683 Neighboring gene transmembrane protein 134 Neighboring gene G protein-coupled receptor 152 Neighboring gene 60S ribosomal protein L35a

Genomic regions, transcripts, and products

Expression

  • Project title: A rat RNA-Seq transcriptomic BodyMap across 11 organs and 4 developmental stages
  • Description: 320 RNA samples isolated from 11 organs (adrenal gland, brain, heart, kidney, liver, lung, muscle, spleen, thymus, and testes or uterus) from both sexes of Fischer 344 rats across four developmental stages (2-, 6-, 21-, and 104-weeks-old)
  • BioProject: PRJNA238328
  • Publication: PMID 24510058
  • Analysis date: Mon Jun 6 17:44:12 2016

General gene information

Markers

Homology

Gene Ontology Provided by RGD

Function Evidence Code Pubs
calcium channel regulator activity IEA
Inferred from Electronic Annotation
more info
 
calcium ion binding IEA
Inferred from Electronic Annotation
more info
 
ion channel binding IEA
Inferred from Electronic Annotation
more info
 
ion channel binding ISO
Inferred from Sequence Orthology
more info
 
molecular_function ND
No biological Data available
more info
 
Process Evidence Code Pubs
biological_process ND
No biological Data available
more info
 
photoreceptor cell morphogenesis IEA
Inferred from Electronic Annotation
more info
 
photoreceptor cell morphogenesis ISO
Inferred from Sequence Orthology
more info
 
phototransduction IEA
Inferred from Electronic Annotation
more info
 
phototransduction ISO
Inferred from Sequence Orthology
more info
 
retinal bipolar neuron differentiation IEA
Inferred from Electronic Annotation
more info
 
retinal bipolar neuron differentiation ISO
Inferred from Sequence Orthology
more info
 
retinal cone cell development IEA
Inferred from Electronic Annotation
more info
 
retinal cone cell development ISO
Inferred from Sequence Orthology
more info
 
visual perception IEA
Inferred from Electronic Annotation
more info
 
visual perception ISO
Inferred from Sequence Orthology
more info
 
Component Evidence Code Pubs
cellular_component ND
No biological Data available
more info
 
cytosol IEA
Inferred from Electronic Annotation
more info
 
cytosol ISO
Inferred from Sequence Orthology
more info
 

NCBI Reference Sequences (RefSeq)

RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001108926.1NP_001102396.1  calcium-binding protein 4

    See identical proteins and their annotated locations for NP_001102396.1

    Status: PROVISIONAL

    Source sequence(s)
    CH473953
    UniProtKB/TrEMBL
    D3ZY59
    Related
    ENSRNOP00000001550.3, ENSRNOT00000001550.3
    Conserved Domains (2) summary
    cd00051
    Location:206269
    EFh; EF-hand, calcium binding motif; A diverse superfamily of calcium sensors and calcium signal modulators; most examples in this alignment model have 2 active canonical EF hands. Ca2+ binding induces a conformational change in the EF-hand motif, leading to ...
    pfam13499
    Location:131190
    EF-hand_7; EF-hand domain pair

RefSeqs of Annotated Genomes: Rattus norvegicus Annotation Release 106 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Rnor_6.0 Primary Assembly

Genomic

  1. NC_005100.4 Reference Rnor_6.0 Primary Assembly

    Range
    219383452..219388009 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Alternate Rn_Celera

Genomic

  1. AC_000069.1 Alternate Rn_Celera

    Range
    198973082..198977581 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
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