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IPW imprinted in Prader-Willi syndrome [ Homo sapiens (human) ]

Gene ID: 3653, updated on 21-Jul-2021

Summary

Official Symbol
IPWprovided by HGNC
Official Full Name
imprinted in Prader-Willi syndromeprovided by HGNC
Primary source
HGNC:HGNC:6109
See related
MIM:601491
Gene type
ncRNA
RefSeq status
REVIEWED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Also known as
NCRNA00002
Summary
This gene is non-protein coding, is expressed exclusively from the paternal allele, and may play a role in the imprinting process. Mutations in this gene are associated with Prader-Willi syndrome. [provided by RefSeq, May 2010]
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Genomic context

See IPW in Genome Data Viewer
Location:
15q11.2
Exon count:
3
Annotation release Status Assembly Chr Location
109.20210514 current GRCh38.p13 (GCF_000001405.39) 15 NC_000015.10 (25116545..25122476)
105.20201022 previous assembly GRCh37.p13 (GCF_000001405.25) 15 NC_000015.9 (25361692..25367623)

Chromosome 15 - NC_000015.10Genomic Context describing neighboring genes Neighboring gene small nucleolar RNA host gene 14 Neighboring gene small nucleolar RNA, C/D box 116 cluster Neighboring gene small nucleolar RNA, C/D box 116-29 Neighboring gene small nucleolar RNA, C/D box 116-30 Neighboring gene Prader Willi/Angelman region RNA 1 Neighboring gene DMAC1 pseudogene 1

Genomic regions, transcripts, and products

Expression

  • Project title: HPA RNA-seq normal tissues
  • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
  • BioProject: PRJEB4337
  • Publication: PMID 24309898
  • Analysis date: Wed Apr 4 07:08:55 2018

Interactions

Products Interactant Other Gene Complex Source Pubs Description

General gene information

Markers

Other Names

  • imprinted in Prader-Willi syndrome (non-protein coding)
  • non-protein coding RNA 2

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

Genomic

  1. NG_021193.1 RefSeqGene

    Range
    5001..10932
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
  2. NG_002690.1 

    Range
    335636..341567
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

RNA

  1. NR_023915.1 RNA Sequence

    Status: REVIEWED

    Source sequence(s)
    AC124303, CN332356, U12897

RefSeqs of Annotated Genomes: Homo sapiens Updated Annotation Release 109.20210514

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p13 Primary Assembly

Genomic

  1. NC_000015.10 Reference GRCh38.p13 Primary Assembly

    Range
    25116545..25122476
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
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