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Caln1 calneuron 1 [ Rattus norvegicus (Norway rat) ]

Gene ID: 363909, updated on 21-Jul-2018

Summary

Official Symbol
Caln1provided by RGD
Official Full Name
calneuron 1provided by RGD
Primary source
RGD:1305843
See related
Ensembl:ENSRNOG00000000886
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Rattus norvegicus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Rattus
Expression
Biased expression in Adrenal (RPKM 289.5), Brain (RPKM 120.6) and 1 other tissue See more
Orthologs

Genomic context

See Caln1 in Genome Data Viewer
Location:
12q12
Exon count:
13
Annotation release Status Assembly Chr Location
106 current Rnor_6.0 (GCF_000001895.5) 12 NC_005111.4 (29307117..29796996, complement)
104 previous assembly Rnor_5.0 (GCF_000001895.4) 12 NC_005111.3 (31251402..31733594, complement)

Chromosome 12 - NC_005111.4Genomic Context describing neighboring genes Neighboring gene polypeptide N-acetylgalactosaminyltransferase 17 Neighboring gene S-adenosyl-L-methionine-dependent tRNA 4-demethylwyosine synthase-like Neighboring gene uncharacterized LOC102550645 Neighboring gene 40S ribosomal protein S15a pseudogene Neighboring gene interferon-induced transmembrane protein 1 pseudogene Neighboring gene tRNA-yW synthesizing protein 1 homolog Neighboring gene SBDS, ribosome maturation factor

Genomic regions, transcripts, and products

Expression

  • Project title: A rat RNA-Seq transcriptomic BodyMap across 11 organs and 4 developmental stages
  • Description: 320 RNA samples isolated from 11 organs (adrenal gland, brain, heart, kidney, liver, lung, muscle, spleen, thymus, and testes or uterus) from both sexes of Fischer 344 rats across four developmental stages (2-, 6-, 21-, and 104-weeks-old)
  • BioProject: PRJNA238328
  • Publication: PMID 24510058
  • Analysis date: Mon Jun 6 17:44:12 2016

Bibliography

General gene information

Markers

Homology

Gene Ontology Provided by RGD

Function Evidence Code Pubs
calcium ion binding IEA
Inferred from Electronic Annotation
more info
 
Component Evidence Code Pubs
Golgi apparatus IEA
Inferred from Electronic Annotation
more info
 
integral component of membrane IEA
Inferred from Electronic Annotation
more info
 
perinuclear region of cytoplasm IEA
Inferred from Electronic Annotation
more info
 
plasma membrane IEA
Inferred from Electronic Annotation
more info
 
trans-Golgi network membrane IEA
Inferred from Electronic Annotation
more info
 
trans-Golgi network membrane ISO
Inferred from Sequence Orthology
more info
 

General protein information

Preferred Names
calcium-binding protein 8
Names
caBP8
calneuron I

NCBI Reference Sequences (RefSeq)

RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001077201.1NP_001070669.1  calcium-binding protein 8

    See identical proteins and their annotated locations for NP_001070669.1

    Status: PROVISIONAL

    Source sequence(s)
    DQ914830
    UniProtKB/TrEMBL
    Q06BI2
    Related
    ENSRNOP00000001185.5, ENSRNOT00000001185.4
    Conserved Domains (1) summary
    cl25352
    Location:74184
    EFh_PEF; The penta-EF hand (PEF) family

RefSeqs of Annotated Genomes: Rattus norvegicus Annotation Release 106 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Rnor_6.0 Primary Assembly

Genomic

  1. NC_005111.4 Reference Rnor_6.0 Primary Assembly

    Range
    29307117..29796996 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_017598405.1XP_017453894.1  calcium-binding protein 8 isoform X1

    Conserved Domains (2) summary
    cd00051
    Location:114175
    EFh; EF-hand, calcium binding motif; A diverse superfamily of calcium sensors and calcium signal modulators; most examples in this alignment model have 2 active canonical EF hands. Ca2+ binding induces a conformational change in the EF-hand motif, leading to ...
    pfam13499
    Location:115175
    EF-hand_7; EF-hand domain pair
  2. XM_017598406.1XP_017453895.1  calcium-binding protein 8 isoform X1

    Conserved Domains (2) summary
    cd00051
    Location:114175
    EFh; EF-hand, calcium binding motif; A diverse superfamily of calcium sensors and calcium signal modulators; most examples in this alignment model have 2 active canonical EF hands. Ca2+ binding induces a conformational change in the EF-hand motif, leading to ...
    pfam13499
    Location:115175
    EF-hand_7; EF-hand domain pair
  3. XM_017598407.1XP_017453896.1  calcium-binding protein 8 isoform X1

    Conserved Domains (2) summary
    cd00051
    Location:114175
    EFh; EF-hand, calcium binding motif; A diverse superfamily of calcium sensors and calcium signal modulators; most examples in this alignment model have 2 active canonical EF hands. Ca2+ binding induces a conformational change in the EF-hand motif, leading to ...
    pfam13499
    Location:115175
    EF-hand_7; EF-hand domain pair
  4. XM_006249243.3XP_006249305.1  calcium-binding protein 8 isoform X3

    See identical proteins and their annotated locations for XP_006249305.1

    UniProtKB/Swiss-Prot
    Q06BI3
    Conserved Domains (1) summary
    cl25352
    Location:32142
    EFh_PEF; The penta-EF hand (PEF) family
  5. XM_017598409.1XP_017453898.1  calcium-binding protein 8 isoform X3

    UniProtKB/Swiss-Prot
    Q06BI3
    Conserved Domains (1) summary
    cl25352
    Location:32142
    EFh_PEF; The penta-EF hand (PEF) family
  6. XM_017598408.1XP_017453897.1  calcium-binding protein 8 isoform X2

Alternate Rn_Celera

Genomic

  1. AC_000080.1 Alternate Rn_Celera

    Range
    27542062..27969078 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
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