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Gjd3 gap junction protein, delta 3 [ Rattus norvegicus (Norway rat) ]

Gene ID: 363677, updated on 21-Jul-2018

Summary

Official Symbol
Gjd3provided by RGD
Official Full Name
gap junction protein, delta 3provided by RGD
Primary source
RGD:1308942
See related
Ensembl:ENSRNOG00000051691
Gene type
protein coding
RefSeq status
MODEL
Organism
Rattus norvegicus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Rattus
Also known as
Gjc1; Cx30.2
Expression
Biased expression in Heart (RPKM 5.5), Brain (RPKM 4.4) and 8 other tissues See more
Orthologs

Genomic context

See Gjd3 in Genome Data Viewer
Location:
10q31
Exon count:
2
Annotation release Status Assembly Chr Location
106 current Rnor_6.0 (GCF_000001895.5) 10 NC_005109.4 (86888982..86891915, complement)
104 previous assembly Rnor_5.0 (GCF_000001895.4) 10 NC_005109.3 (86674192..86689734, complement)

Chromosome 10 - NC_005109.4Genomic Context describing neighboring genes Neighboring gene cell division cycle 6 Neighboring gene uncharacterized LOC108352131 Neighboring gene retinoic acid receptor, alpha Neighboring gene DNA topoisomerase II alpha Neighboring gene insulin-like growth factor binding protein 4

Genomic regions, transcripts, and products

Expression

  • Project title: A rat RNA-Seq transcriptomic BodyMap across 11 organs and 4 developmental stages
  • Description: 320 RNA samples isolated from 11 organs (adrenal gland, brain, heart, kidney, liver, lung, muscle, spleen, thymus, and testes or uterus) from both sexes of Fischer 344 rats across four developmental stages (2-, 6-, 21-, and 104-weeks-old)
  • BioProject: PRJNA238328
  • Publication: PMID 24510058
  • Analysis date: Mon Jun 6 17:44:12 2016

General gene information

Markers

Homology

Gene Ontology Provided by RGD

Function Evidence Code Pubs
gap junction channel activity IMP
Inferred from Mutant Phenotype
more info
PubMed 
gap junction channel activity involved in AV node cell-bundle of His cell electrical coupling IEA
Inferred from Electronic Annotation
more info
 
gap junction channel activity involved in AV node cell-bundle of His cell electrical coupling ISO
Inferred from Sequence Orthology
more info
 
ion channel activity IEA
Inferred from Electronic Annotation
more info
 
ion channel activity ISO
Inferred from Sequence Orthology
more info
 
Process Evidence Code Pubs
AV node cell to bundle of His cell communication by electrical coupling IEA
Inferred from Electronic Annotation
more info
 
AV node cell to bundle of His cell communication by electrical coupling ISO
Inferred from Sequence Orthology
more info
 
NOT cell communication involved in cardiac conduction ISO
Inferred from Sequence Orthology
more info
 
gap junction assembly IEA
Inferred from Electronic Annotation
more info
 
gap junction assembly ISO
Inferred from Sequence Orthology
more info
 
ion transmembrane transport IEA
Inferred from Electronic Annotation
more info
 
response to glucose IDA
Inferred from Direct Assay
more info
PubMed 
transmembrane transport ISO
Inferred from Sequence Orthology
more info
 
Component Evidence Code Pubs
cell surface IEA
Inferred from Electronic Annotation
more info
 
cell surface ISO
Inferred from Sequence Orthology
more info
 
connexin complex IEA
Inferred from Electronic Annotation
more info
 
connexin complex ISO
Inferred from Sequence Orthology
more info
 
gap junction ISO
Inferred from Sequence Orthology
more info
 
integral component of membrane IEA
Inferred from Electronic Annotation
more info
 

General protein information

Preferred Names
gap junction delta-3 protein
Names
connexin30.2
gap junction membrane channel protein chi 1

NCBI Reference Sequences (RefSeq)

RefSeqs of Annotated Genomes: Rattus norvegicus Annotation Release 106 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Rnor_6.0 Primary Assembly

Genomic

  1. NC_005109.4 Reference Rnor_6.0 Primary Assembly

    Range
    86888982..86891915 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_343965.6XP_343966.4  gap junction delta-3 protein

    See identical proteins and their annotated locations for XP_343966.4

    UniProtKB/TrEMBL
    E9PTP3
    Related
    ENSRNOP00000072036.1, ENSRNOT00000084275.1
    Conserved Domains (3) summary
    smart00037
    Location:4476
    CNX; Connexin homologues
    smart01089
    Location:147212
    Connexin_CCC; Gap junction channel protein cysteine-rich domain
    pfam00029
    Location:3214
    Connexin; Connexin

Alternate Rn_Celera

Genomic

  1. AC_000078.1 Alternate Rn_Celera

    Range
    82675110..82678043 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_001081399.3XP_001081399.1  gap junction delta-3 protein

    See identical proteins and their annotated locations for XP_001081399.1

    UniProtKB/TrEMBL
    E9PTP3
    Conserved Domains (3) summary
    smart00037
    Location:4476
    CNX; Connexin homologues
    smart01089
    Location:147212
    Connexin_CCC; Gap junction channel protein cysteine-rich domain
    pfam00029
    Location:3214
    Connexin; Connexin
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