Format

Send to:

Choose Destination

Pbdc1 polysaccharide biosynthesis domain containing 1 [ Rattus norvegicus (Norway rat) ]

Gene ID: 363485, updated on 21-Jul-2018

Summary

Official Symbol
Pbdc1provided by RGD
Official Full Name
polysaccharide biosynthesis domain containing 1provided by RGD
Primary source
RGD:1562502
See related
Ensembl:ENSRNOG00000002662
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Rattus norvegicus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Rattus
Also known as
RGD1562502
Expression
Biased expression in Thymus (RPKM 67.2), Brain (RPKM 51.1) and 9 other tissues See more
Orthologs

Genomic context

See Pbdc1 in Genome Data Viewer
Location:
Xq22
Exon count:
7
Annotation release Status Assembly Chr Location
106 current Rnor_6.0 (GCF_000001895.5) X NC_005120.4 (76042239..76092964)
104 previous assembly Rnor_5.0 (GCF_000001895.4) X NC_005120.3 (76840414..76845113)

Chromosome X - NC_005120.4Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC100912991 Neighboring gene uncharacterized LOC102557587 Neighboring gene 60S ribosomal protein L19 pseudogene Neighboring gene MAGE family member E1 Neighboring gene trafficking protein particle complex subunit 13-like Neighboring gene uncharacterized LOC103690869

Genomic regions, transcripts, and products

Expression

  • Project title: A rat RNA-Seq transcriptomic BodyMap across 11 organs and 4 developmental stages
  • Description: 320 RNA samples isolated from 11 organs (adrenal gland, brain, heart, kidney, liver, lung, muscle, spleen, thymus, and testes or uterus) from both sexes of Fischer 344 rats across four developmental stages (2-, 6-, 21-, and 104-weeks-old)
  • BioProject: PRJNA238328
  • Publication: PMID 24510058
  • Analysis date: Mon Jun 6 17:44:12 2016

General gene information

Markers

Homology

Gene Ontology Provided by RGD

Function Evidence Code Pubs
molecular_function ND
No biological Data available
more info
 
Process Evidence Code Pubs
biological_process ND
No biological Data available
more info
 
Component Evidence Code Pubs
cellular_component ND
No biological Data available
more info
 

NCBI Reference Sequences (RefSeq)

RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001108818.1NP_001102288.1  protein PBDC1

    See identical proteins and their annotated locations for NP_001102288.1

    Status: PROVISIONAL

    Source sequence(s)
    CH473969
    UniProtKB/TrEMBL
    G3V6C3
    Related
    ENSRNOP00000003667.4, ENSRNOT00000003667.5
    Conserved Domains (1) summary
    pfam04669
    Location:35158
    Polysacc_synt_4; Polysaccharide biosynthesis

RefSeqs of Annotated Genomes: Rattus norvegicus Annotation Release 106 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Rnor_6.0 Primary Assembly

Genomic

  1. NC_005120.4 Reference Rnor_6.0 Primary Assembly

    Range
    76042239..76092964
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_008773349.2XP_008771571.1  protein PBDC1 isoform X1

    Conserved Domains (1) summary
    cl04661
    Location:35136
    Polysacc_synt_4; Polysaccharide biosynthesis

Alternate Rn_Celera

Genomic

  1. AC_000089.1 Alternate Rn_Celera

    Range
    71487174..71491873
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
Support Center