Format

Send to:

Choose Destination

Creld2 cysteine-rich with EGF-like domains 2 [ Rattus norvegicus (Norway rat) ]

Gene ID: 362978, updated on 18-Apr-2019

Summary

Official Symbol
Creld2provided by RGD
Official Full Name
cysteine-rich with EGF-like domains 2provided by RGD
Primary source
RGD:1310614
See related
Ensembl:ENSRNOG00000004659
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Rattus norvegicus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Rattus
Also known as
RGD1310614
Expression
Biased expression in Testes (RPKM 251.3), Spleen (RPKM 193.3) and 9 other tissues See more
Orthologs

Genomic context

See Creld2 in Genome Data Viewer
Location:
7q34
Exon count:
10
Annotation release Status Assembly Chr Location
106 current Rnor_6.0 (GCF_000001895.5) 7 NC_005106.4 (129812746..129819641)
104 previous assembly Rnor_5.0 (GCF_000001895.4) 7 NC_005106.3 (129501469..129508353)

Chromosome 7 - NC_005106.4Genomic Context describing neighboring genes Neighboring gene zinc finger, BED-type containing 4 Neighboring gene ALG12, alpha-1,6-mannosyltransferase Neighboring gene Pim-3 proto-oncogene, serine/threonine kinase Neighboring gene tubulin tyrosine ligase like 8

Genomic regions, transcripts, and products

Expression

  • Project title: A rat RNA-Seq transcriptomic BodyMap across 11 organs and 4 developmental stages
  • Description: 320 RNA samples isolated from 11 organs (adrenal gland, brain, heart, kidney, liver, lung, muscle, spleen, thymus, and testes or uterus) from both sexes of Fischer 344 rats across four developmental stages (2-, 6-, 21-, and 104-weeks-old)
  • BioProject: PRJNA238328
  • Publication: PMID 24510058
  • Analysis date: Mon Jun 6 17:44:12 2016

General gene information

Homology

Clone Names

  • MGC112714

Gene Ontology Provided by RGD

Function Evidence Code Pubs
calcium ion binding IEA
Inferred from Electronic Annotation
more info
 
Component Evidence Code Pubs
Golgi apparatus IEA
Inferred from Electronic Annotation
more info
 
Golgi apparatus ISO
Inferred from Sequence Orthology
more info
PubMed 
endoplasmic reticulum IEA
Inferred from Electronic Annotation
more info
 
endoplasmic reticulum ISO
Inferred from Sequence Orthology
more info
PubMed 
extracellular space IEA
Inferred from Electronic Annotation
more info
 
extracellular space ISO
Inferred from Sequence Orthology
more info
PubMed 

General protein information

Preferred Names
cysteine-rich with EGF-like domain protein 2

NCBI Reference Sequences (RefSeq)

RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001037208.1NP_001032285.1  cysteine-rich with EGF-like domain protein 2 precursor

    See identical proteins and their annotated locations for NP_001032285.1

    Status: PROVISIONAL

    Source sequence(s)
    BC098722
    UniProtKB/Swiss-Prot
    Q4G063
    Related
    ENSRNOP00000006357.5, ENSRNOT00000006357.5
    Conserved Domains (3) summary
    smart00261
    Location:191227
    FU; Furin-like repeats
    pfam11938
    Location:2782
    DUF3456; TLR4 regulator and MIR-interacting MSAP
    cl00057
    Location:281325
    vWFA; Von Willebrand factor type A (vWA) domain was originally found in the blood coagulation protein von Willebrand factor (vWF). Typically, the vWA domain is made up of approximately 200 amino acid residues folded into a classic a/b para-rossmann type of ...

RefSeqs of Annotated Genomes: Rattus norvegicus Annotation Release 106 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Rnor_6.0 Primary Assembly

Genomic

  1. NC_005106.4 Reference Rnor_6.0 Primary Assembly

    Range
    129812746..129819641
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_006242216.3XP_006242278.1  cysteine-rich with EGF-like domain protein 2 isoform X1

    Conserved Domains (2) summary
    smart00261
    Location:134168
    FU; Furin-like repeats
    cl00057
    Location:222266
    vWFA; Von Willebrand factor type A (vWA) domain was originally found in the blood coagulation protein von Willebrand factor (vWF). Typically, the vWA domain is made up of approximately 200 amino acid residues folded into a classic a/b para-rossmann type of ...

Alternate Rn_Celera

Genomic

  1. AC_000075.1 Alternate Rn_Celera

    Range
    116383403..116390251
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
Support Center