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Slc41a2 solute carrier family 41 member 2 [ Rattus norvegicus (Norway rat) ]

Gene ID: 362861, updated on 13-Aug-2019

Summary

Official Symbol
Slc41a2provided by RGD
Official Full Name
solute carrier family 41 member 2provided by RGD
Primary source
RGD:1307292
See related
Ensembl:ENSRNOG00000008713
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Rattus norvegicus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Rattus
Annotation information
Annotation category: partial on reference assembly
Expression
Biased expression in Liver (RPKM 377.6), Testes (RPKM 57.8) and 3 other tissues See more
Orthologs

Genomic context

See Slc41a2 in Genome Data Viewer
Location:
7q13
Exon count:
10
Annotation release Status Assembly Chr Location
106 current Rnor_6.0 (GCF_000001895.5) 7 NC_005106.4 (26522314..26607861)
104 previous assembly Rnor_5.0 (GCF_000001895.4) 7 NC_005106.3 (26651682..26734269)

Chromosome 7 - NC_005106.4Genomic Context describing neighboring genes Neighboring gene similar to DNA segment, Chr 10, Wayne State University 102, expressed Neighboring gene uncharacterized LOC102550067 Neighboring gene vegetative cell wall protein gp1-like Neighboring gene carbohydrate sulfotransferase 11 Neighboring gene uncharacterized LOC103692813 Neighboring gene thioredoxin reductase 1 Neighboring gene EP300 interacting inhibitor of differentiation 3

Genomic regions, transcripts, and products

Expression

  • Project title: A rat RNA-Seq transcriptomic BodyMap across 11 organs and 4 developmental stages
  • Description: 320 RNA samples isolated from 11 organs (adrenal gland, brain, heart, kidney, liver, lung, muscle, spleen, thymus, and testes or uterus) from both sexes of Fischer 344 rats across four developmental stages (2-, 6-, 21-, and 104-weeks-old)
  • BioProject: PRJNA238328
  • Publication: PMID 24510058
  • Analysis date: Mon Jun 6 17:44:12 2016

Pathways from BioSystems

General gene information

Markers

Homology

Gene Ontology Provided by RGD

Function Evidence Code Pubs
divalent inorganic cation transmembrane transporter activity IEA
Inferred from Electronic Annotation
more info
 
divalent inorganic cation transmembrane transporter activity ISO
Inferred from Sequence Orthology
more info
PubMed 
Process Evidence Code Pubs
cation transmembrane transport IEA
Inferred from Electronic Annotation
more info
 
divalent metal ion transport IEA
Inferred from Electronic Annotation
more info
 
divalent metal ion transport ISO
Inferred from Sequence Orthology
more info
PubMed 
Component Evidence Code Pubs
integral component of membrane IEA
Inferred from Electronic Annotation
more info
 
plasma membrane IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 

General protein information

Preferred Names
solute carrier family 41 member 2
Names
solute carrier family 41 (magnesium transporter), member 2

NCBI Reference Sequences (RefSeq)

RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001108742.1NP_001102212.1  solute carrier family 41 member 2

    See identical proteins and their annotated locations for NP_001102212.1

    Status: PROVISIONAL

    Source sequence(s)
    CH473960
    UniProtKB/TrEMBL
    D4A7D4
    Related
    ENSRNOP00000011572.6, ENSRNOT00000011572.6
    Conserved Domains (1) summary
    pfam01769
    Location:389529
    MgtE; Divalent cation transporter

RefSeqs of Annotated Genomes: Rattus norvegicus Annotation Release 106 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Rnor_6.0 Primary Assembly

Genomic

  1. NC_005106.4 Reference Rnor_6.0 Primary Assembly

    Range
    26522314..26607861
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Alternate Rn_Celera

Genomic

  1. AC_000075.1 Alternate Rn_Celera

    Range
    17567910..17673805
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
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