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Atxn7l1 ataxin 7-like 1 [ Rattus norvegicus (Norway rat) ]

Gene ID: 362726, updated on 10-Feb-2026
Official Symbol
Atxn7l1provided by RGD
Official Full Name
ataxin 7-like 1provided by RGD
Primary source
RGD:1305730
See related
Ensembl:ENSRNOG00000010415 AllianceGenome:RGD:1305730
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Rattus norvegicus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Rattus
Also known as
Atxn7l4; RGD1305730; RGD1564242
Summary
Orthologous to human ATXN7L1 (ataxin 7 like 1). [provided by Alliance of Genome Resources, Jul 2025]
Expression
Biased expression in Thymus (RPKM 32.1), Spleen (RPKM 30.8) and 9 other tissues See more
Orthologs
all
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Try the new Transcripts and proteins table
See Atxn7l1 in Genome Data Viewer
Location:
6q16
Exon count:
23
Annotation release Status Assembly Chr Location
RS_2024_02 current GRCr8 (GCF_036323735.1) 6 NC_086024.1 (55487309..55709751)
RS_2023_06 previous assembly mRatBN7.2 (GCF_015227675.2) 6 NC_051341.1 (49759876..49982323)
106 previous assembly Rnor_6.0 (GCF_000001895.5) 6 NC_005105.4 (52459930..52680552)

Chromosome 6 - NC_086024.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC134479364 Neighboring gene uncharacterized LOC102547703 Neighboring gene uncharacterized LOC102549100 Neighboring gene uncharacterized LOC108351223 Neighboring gene EF-hand calcium binding domain 10

Go to nucleotide: Graphics FASTA GenBank

  • Project title: A rat RNA-Seq transcriptomic BodyMap across 11 organs and 4 developmental stages
  • Description: 320 RNA samples isolated from 11 organs (adrenal gland, brain, heart, kidney, liver, lung, muscle, spleen, thymus, and testes or uterus) from both sexes of Fischer 344 rats across four developmental stages (2-, 6-, 21-, and 104-weeks-old)
  • BioProject: PRJNA238328
  • Publication: PMID 24510058
  • Analysis date: Mon Jun 6 17:44:12 2016

Related articles in PubMed

  1. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Strausberg RL, et al. Proc Natl Acad Sci U S A, 2002 Dec 24. PMID 12477932, Free PMC Article

GeneRIFs: Gene References Into Functions

Markers

Homology

Gene Ontology Provided by RGD

Process Evidence Code Pubs
involved_in biological_process ND
No biological Data available
more info
  
Preferred Names
ataxin-7-like protein 1
Names
ataxin 7-like 4

NEW Try the new Transcript table

RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001427851.1 → NP_001414780.1  ataxin-7-like protein 1

    Status: VALIDATED

    Source sequence(s)
    JAXUCZ010000006

RefSeqs of Annotated Genomes: GCF_036323735.1-RS_2024_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCr8

Genomic

  1. NC_086024.1 Reference GRCr8

    Range
    55487309..55709751
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_039113162.2 → XP_038969090.1  ataxin-7-like protein 1 isoform X2

    Conserved Domains (1) summary
    pfam08313
    Location:309 → 369
    SCA7; zinc-binding domain

  2. XM_039113164.2 → XP_038969092.1  ataxin-7-like protein 1 isoform X3

    Conserved Domains (1) summary
    pfam08313
    Location:309 → 369
    SCA7; zinc-binding domain

  3. XM_063262082.1 → XP_063118152.1  ataxin-7-like protein 1 isoform X10

  4. XM_008764632.4 → XP_008762854.1  ataxin-7-like protein 1 isoform X5

    See identical proteins and their annotated locations for XP_008762854.1

    Conserved Domains (1) summary
    pfam08313
    Location:276 → 342
    SCA7; SCA7, zinc-binding domain

  5. XM_006240016.5 → XP_006240078.1  ataxin-7-like protein 1 isoform X14

    See identical proteins and their annotated locations for XP_006240078.1

    Conserved Domains (1) summary
    pfam08313
    Location:276 → 342
    SCA7; SCA7, zinc-binding domain

  6. XM_008764634.3 → XP_008762856.1  ataxin-7-like protein 1 isoform X15

    See identical proteins and their annotated locations for XP_008762856.1

    Conserved Domains (1) summary
    pfam08313
    Location:276 → 342
    SCA7; SCA7, zinc-binding domain

  7. XM_063262092.1 → XP_063118162.1  ataxin-7-like protein 1 isoform X23

  8. XM_039113161.2 → XP_038969089.1  ataxin-7-like protein 1 isoform X1

    Conserved Domains (1) summary
    pfam08313
    Location:309 → 369
    SCA7; zinc-binding domain

  9. XM_039113167.2 → XP_038969095.1  ataxin-7-like protein 1 isoform X8

    Conserved Domains (1) summary
    pfam08313
    Location:309 → 369
    SCA7; zinc-binding domain

  10. XM_006240015.5 → XP_006240077.1  ataxin-7-like protein 1 isoform X12

    See identical proteins and their annotated locations for XP_006240077.1

    Conserved Domains (1) summary
    pfam08313
    Location:276 → 342
    SCA7; SCA7, zinc-binding domain

  11. XM_006240019.5 → XP_006240081.1  ataxin-7-like protein 1 isoform X24

    See identical proteins and their annotated locations for XP_006240081.1

    UniProtKB/TrEMBL
    B2GV59

  12. XM_039113165.2 → XP_038969093.1  ataxin-7-like protein 1 isoform X4

    Conserved Domains (1) summary
    pfam08313
    Location:286 → 346
    SCA7; zinc-binding domain

  13. XM_063262087.1 → XP_063118157.1  ataxin-7-like protein 1 isoform X17

  14. XM_039113166.2 → XP_038969094.1  ataxin-7-like protein 1 isoform X7

    Conserved Domains (1) summary
    pfam08313
    Location:225 → 285
    SCA7; zinc-binding domain

  15. XM_063262078.1 → XP_063118148.1  ataxin-7-like protein 1 isoform X6

  16. XM_063262079.1 → XP_063118149.1  ataxin-7-like protein 1 isoform X7

  17. XM_063262091.1 → XP_063118161.1  ataxin-7-like protein 1 isoform X21

  18. XM_006240014.5 → XP_006240076.1  ataxin-7-like protein 1 isoform X11

    See identical proteins and their annotated locations for XP_006240076.1

    Conserved Domains (1) summary
    pfam08313
    Location:185 → 245
    SCA7; zinc-binding domain

  19. XM_063262085.1 → XP_063118155.1  ataxin-7-like protein 1 isoform X16

  20. XM_063262089.1 → XP_063118159.1  ataxin-7-like protein 1 isoform X20

    UniProtKB/TrEMBL
    F1M9V0
    Related
    ENSRNOP00000014054.8, ENSRNOT00000014054.10

  21. XM_039113168.2 → XP_038969096.1  ataxin-7-like protein 1 isoform X11

    Conserved Domains (1) summary
    pfam08313
    Location:185 → 245
    SCA7; zinc-binding domain

  22. XM_006240013.5 → XP_006240075.1  ataxin-7-like protein 1 isoform X11

    See identical proteins and their annotated locations for XP_006240075.1

    Conserved Domains (1) summary
    pfam08313
    Location:185 → 245
    SCA7; zinc-binding domain

  23. XM_063262084.1 → XP_063118154.1  ataxin-7-like protein 1 isoform X13

  24. XM_063262088.1 → XP_063118158.1  ataxin-7-like protein 1 isoform X18

  25. XM_063262081.1 → XP_063118151.1  ataxin-7-like protein 1 isoform X9

  26. XM_063262083.1 → XP_063118153.1  ataxin-7-like protein 1 isoform X11

  27. XM_063262086.1 → XP_063118156.1  ataxin-7-like protein 1 isoform X16

  28. XM_063262090.1 → XP_063118160.1  ataxin-7-like protein 1 isoform X21

  29. XM_006240017.4 → XP_006240079.1  ataxin-7-like protein 1 isoform X19

    See identical proteins and their annotated locations for XP_006240079.1

    Conserved Domains (1) summary
    pfam08313
    Location:59 → 125
    SCA7; SCA7, zinc-binding domain

  30. XM_006240018.4 → XP_006240080.1  ataxin-7-like protein 1 isoform X19

    See identical proteins and their annotated locations for XP_006240080.1

    Conserved Domains (1) summary
    pfam08313
    Location:59 → 125
    SCA7; SCA7, zinc-binding domain

  31. XM_039113169.2 → XP_038969097.1  ataxin-7-like protein 1 isoform X22

    Conserved Domains (1) summary
    pfam08313
    Location:8 → 42
    SCA7; zinc-binding domain

RNA

  1. XR_005505854.2 RNA Sequence

  2. XR_005505855.2 RNA Sequence

Nucleotide Protein Strain
Heading Accession and Version

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