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Yipf4 Yip1 domain family, member 4 [ Rattus norvegicus (Norway rat) ]

Gene ID: 362699, updated on 27-Nov-2024

Summary

Official Symbol
Yipf4provided by RGD
Official Full Name
Yip1 domain family, member 4provided by RGD
Primary source
RGD:1310157
See related
EnsemblRapid:ENSRNOG00000005610 AllianceGenome:RGD:1310157
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Rattus norvegicus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Rattus
Also known as
RGD1310157
Summary
Predicted to be involved in endoplasmic reticulum to Golgi vesicle-mediated transport and vesicle fusion with Golgi apparatus. Predicted to be located in Golgi apparatus; endoplasmic reticulum; and plasma membrane. Predicted to be active in trans-Golgi network. Orthologous to human YIPF4 (Yip1 domain family member 4). [provided by Alliance of Genome Resources, Nov 2024]
Expression
Biased expression in Kidney (RPKM 294.1), Liver (RPKM 270.9) and 9 other tissues See more
Orthologs
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Genomic context

See Yipf4 in Genome Data Viewer
Location:
6q13
Exon count:
6
Annotation release Status Assembly Chr Location
RS_2024_02 current GRCr8 (GCF_036323735.1) 6 NC_086024.1 (26702647..26714066, complement)
RS_2023_06 previous assembly mRatBN7.2 (GCF_015227675.2) 6 NC_051341.1 (20950774..20962195, complement)
106 previous assembly Rnor_6.0 (GCF_000001895.5) 6 NC_005105.4 (22126870..22138286, complement)

Chromosome 6 - NC_086024.1Genomic Context describing neighboring genes Neighboring gene baculoviral IAP repeat-containing 6 Neighboring gene uncharacterized LOC134479107 Neighboring gene NLR family, CARD domain containing 4 Neighboring gene solute carrier family 30 member 6

Genomic regions, transcripts, and products

Expression

  • Project title: A rat RNA-Seq transcriptomic BodyMap across 11 organs and 4 developmental stages
  • Description: 320 RNA samples isolated from 11 organs (adrenal gland, brain, heart, kidney, liver, lung, muscle, spleen, thymus, and testes or uterus) from both sexes of Fischer 344 rats across four developmental stages (2-, 6-, 21-, and 104-weeks-old)
  • BioProject: PRJNA238328
  • Publication: PMID 24510058
  • Analysis date: Mon Jun 6 17:44:12 2016

Interactions

Products Interactant Other Gene Complex Source Pubs Description

General gene information

Markers

Clone Names

  • MGC95126

Gene Ontology Provided by RGD

Process Evidence Code Pubs
involved_in endoplasmic reticulum to Golgi vesicle-mediated transport IBA
Inferred from Biological aspect of Ancestor
more info
 
involved_in endoplasmic reticulum to Golgi vesicle-mediated transport IEA
Inferred from Electronic Annotation
more info
 
involved_in vesicle fusion with Golgi apparatus IBA
Inferred from Biological aspect of Ancestor
more info
 
Component Evidence Code Pubs
located_in Golgi apparatus IEA
Inferred from Electronic Annotation
more info
 
located_in Golgi apparatus ISO
Inferred from Sequence Orthology
more info
 
located_in Golgi membrane IEA
Inferred from Electronic Annotation
more info
 
located_in endoplasmic reticulum IEA
Inferred from Electronic Annotation
more info
 
located_in endoplasmic reticulum ISO
Inferred from Sequence Orthology
more info
 
located_in intracellular membrane-bounded organelle ISO
Inferred from Sequence Orthology
more info
 
located_in membrane IEA
Inferred from Electronic Annotation
more info
 
located_in plasma membrane IEA
Inferred from Electronic Annotation
more info
 
located_in plasma membrane ISO
Inferred from Sequence Orthology
more info
 
is_active_in trans-Golgi network IBA
Inferred from Biological aspect of Ancestor
more info
 

General protein information

Preferred Names
protein YIPF4
Names
YIP1 family member 4

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001009712.1NP_001009712.1  protein YIPF4

    See identical proteins and their annotated locations for NP_001009712.1

    Status: PROVISIONAL

    Source sequence(s)
    BC088468
    UniProtKB/Swiss-Prot
    Q5M7T4
    UniProtKB/TrEMBL
    A0A8L2Q3C8, A6H9Y0
    Related
    ENSRNOP00000090619.2, ENSRNOT00000110731.2
    Conserved Domains (1) summary
    cl21557
    Location:76239
    Yip1; Yip1 domain

RefSeqs of Annotated Genomes: GCF_036323735.1-RS_2024_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCr8

Genomic

  1. NC_086024.1 Reference GRCr8

    Range
    26702647..26714066 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)