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Dnajc16 DnaJ heat shock protein family (Hsp40) member C16 [ Rattus norvegicus (Norway rat) ]

Gene ID: 362652, updated on 2-Oct-2018

Summary

Official Symbol
Dnajc16provided by RGD
Official Full Name
DnaJ heat shock protein family (Hsp40) member C16provided by RGD
Primary source
RGD:1359395
See related
Ensembl:ENSRNOG00000012503
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Rattus norvegicus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Rattus
Expression
Biased expression in Adrenal (RPKM 100.6), Kidney (RPKM 89.2) and 9 other tissues See more
Orthologs

Genomic context

See Dnajc16 in Genome Data Viewer
Location:
5q36
Exon count:
15
Annotation release Status Assembly Chr Location
106 current Rnor_6.0 (GCF_000001895.5) 5 NC_005104.4 (160325088..160352874, complement)
104 previous assembly Rnor_5.0 (GCF_000001895.4) 5 NC_005104.3 (164037421..164064397, complement)

Chromosome 5 - NC_005104.4Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC102548844 Neighboring gene agmatinase Neighboring gene caspase 9 Neighboring gene chymotrypsin-like elastase family, member 2A

Genomic regions, transcripts, and products

Expression

  • Project title: A rat RNA-Seq transcriptomic BodyMap across 11 organs and 4 developmental stages
  • Description: 320 RNA samples isolated from 11 organs (adrenal gland, brain, heart, kidney, liver, lung, muscle, spleen, thymus, and testes or uterus) from both sexes of Fischer 344 rats across four developmental stages (2-, 6-, 21-, and 104-weeks-old)
  • BioProject: PRJNA238328
  • Publication: PMID 24510058
  • Analysis date: Mon Jun 6 17:44:12 2016

General gene information

Markers

Homology

Clone Names

  • MGC109011

Gene Ontology Provided by RGD

Process Evidence Code Pubs
cell redox homeostasis IEA
Inferred from Electronic Annotation
more info
 
Component Evidence Code Pubs
cell IEA
Inferred from Electronic Annotation
more info
 
integral component of membrane IEA
Inferred from Electronic Annotation
more info
 

General protein information

Preferred Names
dnaJ homolog subfamily C member 16
Names
DnaJ (Hsp40) homolog, subfamily C, member 16

NCBI Reference Sequences (RefSeq)

RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001014194.1NP_001014216.1  dnaJ homolog subfamily C member 16 precursor

    See identical proteins and their annotated locations for NP_001014216.1

    Status: PROVISIONAL

    Source sequence(s)
    BC089875
    UniProtKB/Swiss-Prot
    Q5FVM7
    Related
    ENSRNOP00000017247.3, ENSRNOT00000017247.4
    Conserved Domains (2) summary
    cd02963
    Location:133242
    TRX_DnaJ; TRX domain, DnaJ domain containing protein family; composed of uncharacterized proteins of about 500-800 amino acids, containing an N-terminal DnaJ domain followed by one redox active TRX domain. DnaJ is a member of the 40 kDa heat-shock protein (Hsp40) ...
    pfam00226
    Location:2990
    DnaJ; DnaJ domain

RefSeqs of Annotated Genomes: Rattus norvegicus Annotation Release 106 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Rnor_6.0 Primary Assembly

Genomic

  1. NC_005104.4 Reference Rnor_6.0 Primary Assembly

    Range
    160325088..160352874 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Alternate Rn_Celera

Genomic

  1. AC_000073.1 Alternate Rn_Celera

    Range
    152431156..152458178 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
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