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Rpl11 ribosomal protein L11 [ Rattus norvegicus (Norway rat) ]

Gene ID: 362631, updated on 17-Nov-2020

Summary

Official Symbol
Rpl11provided by RGD
Official Full Name
ribosomal protein L11provided by RGD
Primary source
RGD:1308681
See related
Ensembl:ENSRNOG00000026260
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Rattus norvegicus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Rattus
Expression
Biased expression in Thymus (RPKM 2972.1), Spleen (RPKM 2823.9) and 9 other tissues See more
Orthologs

Genomic context

See Rpl11 in Genome Data Viewer
Location:
5q36
Exon count:
6
Annotation release Status Assembly Chr Location
106 current Rnor_6.0 (GCF_000001895.5) 5 NC_005104.4 (154390809..154394412, complement)
106 current Rn_Celera (GCF_000002265.2) 5 AC_000073.1 (146679072..146682282, complement)
104 previous assembly Rnor_5.0 (GCF_000001895.4) 5 NC_005104.3 (158155377..158158967, complement)

Chromosome 5 - NC_005104.4Genomic Context describing neighboring genes Neighboring gene PITH domain containing 1 Neighboring gene elongin A Neighboring gene uncharacterized LOC102551799 Neighboring gene hypothetical gene supported by NM_022504

Genomic regions, transcripts, and products

Expression

  • Project title: A rat RNA-Seq transcriptomic BodyMap across 11 organs and 4 developmental stages
  • Description: 320 RNA samples isolated from 11 organs (adrenal gland, brain, heart, kidney, liver, lung, muscle, spleen, thymus, and testes or uterus) from both sexes of Fischer 344 rats across four developmental stages (2-, 6-, 21-, and 104-weeks-old)
  • BioProject: PRJNA238328
  • Publication: PMID 24510058
  • Analysis date: Mon Jun 6 17:44:12 2016

Pathways from PubChem

Interactions

Products Interactant Other Gene Complex Source Pubs Description

General gene information

Homology

Clone Names

  • MGC114407

Gene Ontology Provided by RGD

Function Evidence Code Pubs
5S rRNA binding ISO
Inferred from Sequence Orthology
more info
 
RNA binding IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
peroxisome proliferator activated receptor binding IPI
Inferred from Physical Interaction
more info
PubMed 
structural constituent of ribosome IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
structural constituent of ribosome IEA
Inferred from Electronic Annotation
more info
 
ubiquitin ligase inhibitor activity ISO
Inferred from Sequence Orthology
more info
 
ubiquitin protein ligase binding ISO
Inferred from Sequence Orthology
more info
 
Process Evidence Code Pubs
cytoplasmic translation ISO
Inferred from Sequence Orthology
more info
 
negative regulation of DNA-binding transcription factor activity IDA
Inferred from Direct Assay
more info
PubMed 
negative regulation of proteasomal ubiquitin-dependent protein catabolic process ISO
Inferred from Sequence Orthology
more info
 
negative regulation of proteasomal ubiquitin-dependent protein catabolic process ISS
Inferred from Sequence or Structural Similarity
more info
 
negative regulation of protein neddylation ISO
Inferred from Sequence Orthology
more info
 
negative regulation of ubiquitin protein ligase activity ISO
Inferred from Sequence Orthology
more info
 
negative regulation of ubiquitin-dependent protein catabolic process ISO
Inferred from Sequence Orthology
more info
 
positive regulation of gene expression ISO
Inferred from Sequence Orthology
more info
 
positive regulation of intrinsic apoptotic signaling pathway by p53 class mediator ISO
Inferred from Sequence Orthology
more info
 
positive regulation of protein binding ISO
Inferred from Sequence Orthology
more info
 
positive regulation of signal transduction by p53 class mediator ISO
Inferred from Sequence Orthology
more info
 
positive regulation of signal transduction by p53 class mediator ISS
Inferred from Sequence or Structural Similarity
more info
 
protein localization to nucleus ISO
Inferred from Sequence Orthology
more info
 
protein localization to nucleus ISS
Inferred from Sequence or Structural Similarity
more info
 
protein stabilization ISO
Inferred from Sequence Orthology
more info
 
protein targeting ISO
Inferred from Sequence Orthology
more info
 
rRNA processing ISO
Inferred from Sequence Orthology
more info
 
regulation of signal transduction by p53 class mediator ISO
Inferred from Sequence Orthology
more info
 
ribosomal large subunit assembly IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
ribosomal large subunit assembly ISO
Inferred from Sequence Orthology
more info
 
ribosomal large subunit biogenesis ISO
Inferred from Sequence Orthology
more info
 
translation IEA
Inferred from Electronic Annotation
more info
 
Component Evidence Code Pubs
cytoplasm ISO
Inferred from Sequence Orthology
more info
 
cytoplasmic side of rough endoplasmic reticulum membrane ISO
Inferred from Sequence Orthology
more info
 
cytosolic large ribosomal subunit IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
cytosolic large ribosomal subunit IDA
Inferred from Direct Assay
more info
PubMed 
cytosolic large ribosomal subunit ISO
Inferred from Sequence Orthology
more info
 
cytosolic ribosome IDA
Inferred from Direct Assay
more info
PubMed 
large ribosomal subunit ISO
Inferred from Sequence Orthology
more info
 
nucleolus ISO
Inferred from Sequence Orthology
more info
 
nucleolus ISS
Inferred from Sequence or Structural Similarity
more info
 
nucleoplasm ISO
Inferred from Sequence Orthology
more info
 
nucleoplasm ISS
Inferred from Sequence or Structural Similarity
more info
 
polysomal ribosome ISO
Inferred from Sequence Orthology
more info
 
protein-containing complex ISO
Inferred from Sequence Orthology
more info
 
ribosome IEA
Inferred from Electronic Annotation
more info
 
synapse EXP
Inferred from Experiment
more info
PubMed 
synapse IDA
Inferred from Direct Assay
more info
PubMed 

NCBI Reference Sequences (RefSeq)

RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001025739.1NP_001020910.1  60S ribosomal protein L11

    See identical proteins and their annotated locations for NP_001020910.1

    Status: PROVISIONAL

    Source sequence(s)
    BC097372
    UniProtKB/TrEMBL
    Q4V8I6
    Related
    ENSRNOP00000069811.1, ENSRNOT00000079823.1
    Conserved Domains (1) summary
    PTZ00156
    Location:1164
    PTZ00156; 60S ribosomal protein L11; Provisional

RefSeqs of Annotated Genomes: Rattus norvegicus Annotation Release 106 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Rnor_6.0 Primary Assembly

Genomic

  1. NC_005104.4 Reference Rnor_6.0 Primary Assembly

    Range
    154390809..154394412 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_006239224.3XP_006239286.1  60S ribosomal protein L11 isoform X1

    See identical proteins and their annotated locations for XP_006239286.1

    UniProtKB/Swiss-Prot
    P62914
    Related
    ENSRNOP00000037110.3, ENSRNOT00000030043.5
    Conserved Domains (1) summary
    PTZ00156
    Location:5175
    PTZ00156; 60S ribosomal protein L11; Provisional

Alternate Rn_Celera

Genomic

  1. AC_000073.1 Alternate Rn_Celera

    Range
    146679072..146682282 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
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