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Fam180a family with sequence similarity 180, member A [ Rattus norvegicus (Norway rat) ]

Gene ID: 362336, updated on 5-Jan-2022

Summary

Official Symbol
Fam180aprovided by RGD
Official Full Name
family with sequence similarity 180, member Aprovided by RGD
Primary source
RGD:1308013
See related
Ensembl:ENSRNOG00000011750
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Rattus norvegicus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Rattus
Also known as
RGD1308013
Summary
Orthologous to human FAM180A (family with sequence similarity 180 member A). [provided by Alliance of Genome Resources, Nov 2021]
Expression
Biased expression in Kidney (RPKM 47.0), Uterus (RPKM 34.7) and 9 other tissues See more
Orthologs
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Genomic context

See Fam180a in Genome Data Viewer
Location:
4q22
Exon count:
3
Annotation release Status Assembly Chr Location
108 current mRatBN7.2 (GCF_015227675.2) 4 NC_051339.1 (63992867..64008047, complement)
106 previous assembly Rnor_6.0 (GCF_000001895.5) 4 NC_005103.4 (62845054..62860361, complement)

Chromosome 4 - NC_051339.1Genomic Context describing neighboring genes Neighboring gene 60S ribosomal protein L38-like Neighboring gene short transmembrane mitochondrial protein 1 Neighboring gene solute carrier family 13 member 4 Neighboring gene hypothetical LOC100365467 Neighboring gene myotrophin

Genomic regions, transcripts, and products

Expression

  • Project title: A rat RNA-Seq transcriptomic BodyMap across 11 organs and 4 developmental stages
  • Description: 320 RNA samples isolated from 11 organs (adrenal gland, brain, heart, kidney, liver, lung, muscle, spleen, thymus, and testes or uterus) from both sexes of Fischer 344 rats across four developmental stages (2-, 6-, 21-, and 104-weeks-old)
  • BioProject: PRJNA238328
  • Publication: PMID 24510058
  • Analysis date: Mon Jun 6 17:44:12 2016

General gene information

Homology

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001108621.1NP_001102091.1  protein FAM180A precursor

    See identical proteins and their annotated locations for NP_001102091.1

    Status: PROVISIONAL

    Source sequence(s)
    CH473959
    UniProtKB/TrEMBL
    D3Z9K6
    Related
    ENSRNOP00000015752.4, ENSRNOT00000015752.6
    Conserved Domains (1) summary
    pfam15173
    Location:27162
    FAM180; FAM180 family

RefSeqs of Annotated Genomes: Rattus norvegicus Annotation Release 108 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference mRatBN7.2 Primary Assembly

Genomic

  1. NC_051339.1 Reference mRatBN7.2 Primary Assembly

    Range
    63992867..64008047 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
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