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Tmem140 transmembrane protein 140 [ Rattus norvegicus (Norway rat) ]

Gene ID: 362334, updated on 5-Jan-2022

Summary

Official Symbol
Tmem140provided by RGD
Official Full Name
transmembrane protein 140provided by RGD
Primary source
RGD:1549759
See related
Ensembl:ENSRNOG00000026965
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Rattus norvegicus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Rattus
Summary
Predicted to be integral component of membrane. Orthologous to human TMEM140 (transmembrane protein 140). [provided by Alliance of Genome Resources, Nov 2021]
Expression
Biased expression in Liver (RPKM 480.6), Kidney (RPKM 369.2) and 9 other tissues See more
Orthologs
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Genomic context

See Tmem140 in Genome Data Viewer
Location:
4q22
Exon count:
2
Annotation release Status Assembly Chr Location
108 current mRatBN7.2 (GCF_015227675.2) 4 NC_051339.1 (63536477..63547478)
106 previous assembly Rnor_6.0 (GCF_000001895.5) 4 NC_005103.4 (62380914..62391913)

Chromosome 4 - NC_051339.1Genomic Context describing neighboring genes Neighboring gene caldesmon 1 Neighboring gene uncharacterized LOC108350691 Neighboring gene AGBL carboxypeptidase 3 Neighboring gene cell cycle regulator of NHEJ Neighboring gene WD repeat domain 91 Neighboring gene stimulated by retinoic acid 8

Genomic regions, transcripts, and products

Expression

  • Project title: A rat RNA-Seq transcriptomic BodyMap across 11 organs and 4 developmental stages
  • Description: 320 RNA samples isolated from 11 organs (adrenal gland, brain, heart, kidney, liver, lung, muscle, spleen, thymus, and testes or uterus) from both sexes of Fischer 344 rats across four developmental stages (2-, 6-, 21-, and 104-weeks-old)
  • BioProject: PRJNA238328
  • Publication: PMID 24510058
  • Analysis date: Mon Jun 6 17:44:12 2016

General gene information

Markers

Homology

Clone Names

  • MGC109491

Gene Ontology Provided by RGD

Component Evidence Code Pubs
located_in integral component of membrane IEA
Inferred from Electronic Annotation
more info
 

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001009709.1NP_001009709.1  transmembrane protein 140

    See identical proteins and their annotated locations for NP_001009709.1

    Status: PROVISIONAL

    Source sequence(s)
    BC088293
    UniProtKB/Swiss-Prot
    Q5M826
    Related
    ENSRNOP00000031501.4, ENSRNOT00000029845.7
    Conserved Domains (1) summary
    pfam14985
    Location:7184
    TM140; TM140 protein family

RefSeqs of Annotated Genomes: Rattus norvegicus Annotation Release 108 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference mRatBN7.2 Primary Assembly

Genomic

  1. NC_051339.1 Reference mRatBN7.2 Primary Assembly

    Range
    63536477..63547478
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
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