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Tmem87b transmembrane protein 87B [ Rattus norvegicus (Norway rat) ]

Gene ID: 362212, updated on 30-Mar-2024

Summary

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Official Symbol
Tmem87bprovided by RGD
Official Full Name
transmembrane protein 87Bprovided by RGD
Primary source
RGD:1307907
See related
Ensembl:ENSRNOG00000017443 AllianceGenome:RGD:1307907
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Rattus norvegicus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Rattus
Also known as
RGD1307907
Summary
Predicted to be involved in retrograde transport, endosome to Golgi. Predicted to be located in cytosol. Predicted to be integral component of membrane. Predicted to be active in Golgi apparatus and membrane. Orthologous to human TMEM87B (transmembrane protein 87B). [provided by Alliance of Genome Resources, Apr 2022]
Expression
Biased expression in Kidney (RPKM 105.9), Lung (RPKM 104.8) and 9 other tissues See more
Orthologs
human mouse all
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Genomic context

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See Tmem87b in Genome Data Viewer
Location:
3q36
Exon count:
22
Annotation release Status Assembly Chr Location
RS_2024_02 current GRCr8 (GCF_036323735.1) 3 NC_086021.1 (136515155..136550644)
RS_2023_06 previous assembly mRatBN7.2 (GCF_015227675.2) 3 NC_051338.1 (116061933..116097421)
106 previous assembly Rnor_6.0 (GCF_000001895.5) 3 NC_005102.4 (121357787..121393443)

Chromosome 3 - NC_086021.1Genomic Context describing neighboring genes Neighboring gene anaphase promoting complex subunit 1 Neighboring gene MER proto-oncogene, tyrosine kinase Neighboring gene transfer RNA alanine (anticodon AGC) 45 Neighboring gene small nucleolar RNA SNORA17 Neighboring gene fibulin 7

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: A rat RNA-Seq transcriptomic BodyMap across 11 organs and 4 developmental stages
  • Description: 320 RNA samples isolated from 11 organs (adrenal gland, brain, heart, kidney, liver, lung, muscle, spleen, thymus, and testes or uterus) from both sexes of Fischer 344 rats across four developmental stages (2-, 6-, 21-, and 104-weeks-old)
  • BioProject: PRJNA238328
  • Publication: PMID 24510058
  • Analysis date: Mon Jun 6 17:44:12 2016

Bibliography

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Related articles in PubMed

  1. Post-Golgi anterograde transport requires GARP-dependent endosome-to-TGN retrograde transport. Hirata T, et al. Mol Biol Cell, 2015 Sep 1. PMID 26157166, Free PMC Article
  2. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, et al. Brief Bioinform, 2011 Sep. PMID 21873635, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Markers

Homology

Gene Ontology Provided by RGD

Process Evidence Code Pubs
involved_in retrograde transport, endosome to Golgi IBA
Inferred from Biological aspect of Ancestor
more info
  
involved_in retrograde transport, endosome to Golgi ISO
Inferred from Sequence Orthology
more info
  
Component Evidence Code Pubs
is_active_in Golgi apparatus IBA
Inferred from Biological aspect of Ancestor
more info
  
located_in cytosol IEA
Inferred from Electronic Annotation
more info
  
is_active_in membrane IBA
Inferred from Biological aspect of Ancestor
more info
  

General protein information

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Preferred Names
transmembrane protein 87B

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001191854.1 → NP_001178783.1  transmembrane protein 87B precursor

    Status: PROVISIONAL

    Source sequence(s)
    JAXUCZ010000003
    UniProtKB/TrEMBL
    A6HQ39
    Conserved Domains (1) summary
    pfam06814
    Location:175 → 459
    Lung_7-TM_R; Lung seven transmembrane receptor

RefSeqs of Annotated Genomes: GCF_036323735.1-RS_2024_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCr8

Genomic

  1. NC_086021.1 Reference GRCr8

    Range
    136515155..136550644
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_039105464.2 → XP_038961392.1  transmembrane protein 87B isoform X1

    UniProtKB/TrEMBL
    A6HQ39, D4A7B6
    Related
    ENSRNOP00000023569.7
    Conserved Domains (1) summary
    pfam06814
    Location:175 → 459
    Lung_7-TM_R; Lung seven transmembrane receptor

  2. XM_063284164.1 → XP_063140234.1  transmembrane protein 87B isoform X2

RNA

  1. XR_010064665.1 RNA Sequence

Nucleotide Protein Strain
Heading Accession and Version

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