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Shf Src homology 2 domain containing F [ Rattus norvegicus (Norway rat) ]

Gene ID: 362205, updated on 13-Aug-2019

Summary

Official Symbol
Shfprovided by RGD
Official Full Name
Src homology 2 domain containing Fprovided by RGD
Primary source
RGD:1562705
Gene type
protein coding
RefSeq status
MODEL
Organism
Rattus norvegicus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Rattus
Also known as
RGD1562705
Annotation information
Annotation category: partial on reference assembly
Expression
Biased expression in Brain (RPKM 132.1), Liver (RPKM 49.9) and 8 other tissues See more
Orthologs

Genomic context

See Shf in Genome Data Viewer
Location:
3q35
Exon count:
7
Annotation release Status Assembly Chr Location
106 current Rnor_6.0 (GCF_000001895.5) 3 NC_005102.4 (114288021..114307334, complement)
106 current Rn_Celera (GCF_000002265.2) 3 AC_000071.1 (108194195..108213507, complement)
104 previous assembly Rnor_5.0 (GCF_000001895.4) 3 NC_005102.3 (120827311..120837513, complement)

Chromosome 3 - NC_005102.4Genomic Context describing neighboring genes Neighboring gene dual oxidase maturation factor 1 Neighboring gene dual oxidase 1 Neighboring gene uncharacterized LOC102557338 Neighboring gene transfer RNA histidin (anticodon GUG) Neighboring gene transfer RNA histidin (anticodon GUG)

Genomic regions, transcripts, and products

Expression

  • Project title: A rat RNA-Seq transcriptomic BodyMap across 11 organs and 4 developmental stages
  • Description: 320 RNA samples isolated from 11 organs (adrenal gland, brain, heart, kidney, liver, lung, muscle, spleen, thymus, and testes or uterus) from both sexes of Fischer 344 rats across four developmental stages (2-, 6-, 21-, and 104-weeks-old)
  • BioProject: PRJNA238328
  • Publication: PMID 24510058
  • Analysis date: Mon Jun 6 17:44:12 2016

General gene information

Markers

Homology

Gene Ontology Provided by RGD

Function Evidence Code Pubs
phosphotyrosine residue binding IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 

General protein information

Preferred Names
SH2 domain-containing adapter protein F

NCBI Reference Sequences (RefSeq)

RefSeqs of Annotated Genomes: Rattus norvegicus Annotation Release 106 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Rnor_6.0 Primary Assembly

Genomic

  1. NC_005102.4 Reference Rnor_6.0 Primary Assembly

    Range
    114288021..114307334 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_008762216.2XP_008760438.2  SH2 domain-containing adapter protein F

Alternate Rn_Celera

Genomic

  1. AC_000071.1 Alternate Rn_Celera

    Range
    108194195..108213507 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_006224591.2XP_006224653.2  SH2 domain-containing adapter protein F

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