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Rapsn receptor-associated protein of the synapse [ Rattus norvegicus (Norway rat) ]

Gene ID: 362161, updated on 8-Oct-2017
Official Symbol
Rapsnprovided by RGD
Official Full Name
receptor-associated protein of the synapseprovided by RGD
Primary source
RGD:1311592
See related
Ensembl:ENSRNOG00000011208
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Rattus norvegicus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Rattus
Also known as
rapsyn
Orthologs
Location:
3q24
Exon count:
8
Annotation release Status Assembly Chr Location
106 current Rnor_6.0 (GCF_000001895.5) 3 NC_005102.4 (79859815..79869486)
104 previous assembly Rnor_5.0 (GCF_000001895.4) 3 NC_005102.3 (86568568..86578239)

Chromosome 3 - NC_005102.4Genomic Context describing neighboring genes Neighboring gene similar to Elongation factor 1-gamma (EF-1-gamma) (eEF-1B gamma) Neighboring gene CUGBP, Elav-like family member 1 Neighboring gene proteasome 26S subunit, ATPase 3 Neighboring gene solute carrier family 39 member 13

  • Project title: A rat RNA-Seq transcriptomic BodyMap across 11 organs and 4 developmental stages
  • Description: 320 RNA samples isolated from 11 organs (adrenal gland, brain, heart, kidney, liver, lung, muscle, spleen, thymus, and testes or uterus) from both sexes of Fischer 344 rats across four developmental stages (2-, 6-, 21-, and 104-weeks-old)
  • BioProject: PRJNA238328
  • Publication: PMID 24510058
  • Analysis date: Mon Jun 6 17:44:12 2016

GeneRIFs: Gene References Into FunctionsWhat's a GeneRIF?

Products Interactant Other Gene Complex Source Pubs Description

Homology

Gene Ontology Provided by RGD

Function Evidence Code Pubs
acetylcholine receptor binding IEA
Inferred from Electronic Annotation
more info
 
acetylcholine receptor binding ISO
Inferred from Sequence Orthology
more info
PubMed 
ionotropic glutamate receptor binding IPI
Inferred from Physical Interaction
more info
PubMed 
protein membrane anchor IMP
Inferred from Mutant Phenotype
more info
PubMed 
Process Evidence Code Pubs
chemical synaptic transmission IEA
Inferred from Electronic Annotation
more info
 
positive regulation of neuromuscular synaptic transmission IMP
Inferred from Mutant Phenotype
more info
PubMed 
positive regulation of neuron apoptotic process IEA
Inferred from Electronic Annotation
more info
 
positive regulation of neuron apoptotic process ISO
Inferred from Sequence Orthology
more info
PubMed 
regulation of postsynaptic membrane organization IMP
Inferred from Mutant Phenotype
more info
PubMed 
skeletal muscle acetylcholine-gated channel clustering IMP
Inferred from Mutant Phenotype
more info
PubMed 
synaptic transmission, cholinergic IEA
Inferred from Electronic Annotation
more info
 
synaptic transmission, cholinergic ISO
Inferred from Sequence Orthology
more info
PubMed 
Component Evidence Code Pubs
Golgi apparatus IEA
Inferred from Electronic Annotation
more info
 
Golgi apparatus ISO
Inferred from Sequence Orthology
more info
PubMed 
centrosome IEA
Inferred from Electronic Annotation
more info
 
centrosome ISO
Inferred from Sequence Orthology
more info
 
cytosol IEA
Inferred from Electronic Annotation
more info
 
cytosol ISO
Inferred from Sequence Orthology
more info
 
membrane ISO
Inferred from Sequence Orthology
more info
PubMed 
neuromuscular junction IMP
Inferred from Mutant Phenotype
more info
PubMed 
neuromuscular junction ISO
Inferred from Sequence Orthology
more info
PubMed 
plasma membrane IEA
Inferred from Electronic Annotation
more info
 
plasma membrane ISO
Inferred from Sequence Orthology
more info
PubMed 
postsynaptic specialization membrane IEA
Inferred from Electronic Annotation
more info
 
postsynaptic specialization membrane ISO
Inferred from Sequence Orthology
more info
PubMed 
synapse ISO
Inferred from Sequence Orthology
more info
PubMed 
Preferred Names
43 kDa receptor-associated protein of the synapse
Names
nicotinic acetylcholine receptor-associated 46K protein
receptor-associated protein of the synapse, 43 kDa

RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001108584.1NP_001102054.1  43 kDa receptor-associated protein of the synapse

    See identical proteins and their annotated locations for NP_001102054.1

    Status: PROVISIONAL

    Source sequence(s)
    CH473949
    UniProtKB/TrEMBL
    D3ZPG2
    Related
    ENSRNOP00000060958.1, ENSRNOT00000068444.1
    Conserved Domains (5) summary
    COG0457
    Location:4185
    TPR; Tetratricopeptide (TPR) repeat [General function prediction only]
    sd00006
    Location:127151
    TPR; TPR repeat [structural motif]
    pfam13424
    Location:189265
    TPR_12; Tetratricopeptide repeat
    pfam13639
    Location:310350
    zf-RING_2; Ring finger domain
    cl24038
    Location:180
    SNAP; Soluble N-ethylmaleimide-sensitive factor (NSF) Attachment Protein family

RefSeqs of Annotated Genomes: Rattus norvegicus Annotation Release 106 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Rnor_6.0 Primary Assembly

Genomic

  1. NC_005102.4 Reference Rnor_6.0 Primary Assembly

    Range
    79859815..79869486
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_006234528.3XP_006234590.1  43 kDa receptor-associated protein of the synapse isoform X1

    See identical proteins and their annotated locations for XP_006234590.1

    UniProtKB/TrEMBL
    A0A0G2K9X2
    Related
    ENSRNOP00000075166.1, ENSRNOT00000081160.1
    Conserved Domains (5) summary
    COG0457
    Location:9239
    TPR; Tetratricopeptide (TPR) repeat [General function prediction only]
    sd00006
    Location:127151
    TPR; TPR repeat [structural motif]
    pfam13424
    Location:204278
    TPR_12; Tetratricopeptide repeat
    pfam13639
    Location:363403
    zf-RING_2; Ring finger domain
    cl24038
    Location:180
    SNAP; Soluble N-ethylmaleimide-sensitive factor (NSF) Attachment Protein family

Alternate Rn_Celera

Genomic

  1. AC_000071.1 Alternate Rn_Celera

    Range
    76223882..76233161
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
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