Zfand3 zinc finger AN1-type containing 3 [Rattus norvegicus (Norway rat)] - Gene

Summary

Official Symbol: Zfand3provided by RGD
Official Full Name: zinc finger AN1-type containing 3provided by RGD
Primary source: RGD:1307113
See related: EnsemblRapid:ENSRNOG00000059659 AllianceGenome:RGD:1307113
Gene type: protein coding
RefSeq status: PROVISIONAL
Organism: Rattus norvegicus
Lineage: Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Rattus
Also known as: Tex27
Summary: Predicted to enable DNA binding activity and zinc ion binding activity. Orthologous to human ZFAND3 (zinc finger AN1-type containing 3). [provided by Alliance of Genome Resources, Apr 2022]
Expression: Biased expression in Muscle (RPKM 277.4), Heart (RPKM 208.5) and 9 other tissues See more
Orthologs: human mouse all
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Genomic context

Location:: 20p12

Exon count:: 6

Annotation release	Status	Assembly	Chr	Location
RS_2024_02	current	GRCr8 (GCF_036323735.1)	20	NC_086038.1 (8084898..8281093)
RS_2023_06	previous assembly	mRatBN7.2 (GCF_015227675.2)	20	NC_051355.1 (8083407..8279617)
106	previous assembly	Rnor_6.0 (GCF_000001895.5)	20	NC_005119.4 (8693989..8892572)

Chromosome 20 - NC_086038.1 Genomic Context describing neighboring genes

Genomic regions, transcripts, and products

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Genomic Sequence:

Go to nucleotide: Graphics FASTA GenBank

Expression

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See details

Project title: A rat RNA-Seq transcriptomic BodyMap across 11 organs and 4 developmental stages A rat RNA-Seq transcriptomic BodyMap across 11 organs and 4 developmental stages
Description: 320 RNA samples isolated from 11 organs (adrenal gland, brain, heart, kidney, liver, lung, muscle, spleen, thymus, and testes or uterus) from both sexes of Fischer 344 rats across four developmental stages (2-, 6-, 21-, and 104-weeks-old)
BioProject: PRJNA238328
Publication: PMID 24510058
Analysis date: Mon Jun 6 17:44:12 2016

Bibliography

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GeneRIFs: Gene References Into Functions

What's a GeneRIF?

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General gene information

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Gene Ontology Provided by RGD

Function	Evidence Code	Pubs
enables DNA binding	IEA Inferred from Electronic Annotation more info
enables zinc ion binding	IEA Inferred from Electronic Annotation more info

General protein information

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Preferred Names: AN1-type zinc finger protein 3

Names: testis expressed gene 27; testis-expressed protein 27; testis-expressed sequence 27; zinc finger, AN1-type domain 3

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

NM_001012175.1 → NP_001012175.1 AN1-type zinc finger protein 3

See identical proteins and their annotated locations for NP_001012175.1

Status: PROVISIONAL

Source sequence(s)

BC085956

UniProtKB/Swiss-Prot

Q5U2M7

UniProtKB/TrEMBL

A0A0G2JV07

Related

ENSRNOP00000069304.2, ENSRNOT00000085131.3

Conserved Domains (3) summary

pfam01428
Location:160 → 194

zf-AN1; AN1-like Zinc finger

pfam01754
Location:19 → 36

zf-A20; A20-like zinc finger

pfam16972
Location:44 → 93

TipE; Na+ channel auxiliary subunit TipE