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Abcb10 ATP binding cassette subfamily B member 10 [ Rattus norvegicus (Norway rat) ]

Gene ID: 361439, updated on 30-Sep-2021

Summary

Official Symbol
Abcb10provided by RGD
Official Full Name
ATP binding cassette subfamily B member 10provided by RGD
Primary source
RGD:1311222
See related
EnsemblRapid:ENSRNOG00000017993
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Rattus norvegicus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Rattus
Expression
Biased expression in Spleen (RPKM 245.5), Muscle (RPKM 106.9) and 9 other tissues See more
Orthologs
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Genomic context

See Abcb10 in Genome Data Viewer
Location:
19q12
Exon count:
14
Annotation release Status Assembly Chr Location
108 current mRatBN7.2 (GCF_015227675.2) 19 NC_051354.1 (51952655..51982910, complement)
106 previous assembly Rnor_6.0 (GCF_000001895.5) 19 NC_005118.4 (56742809..56772904, complement)

Chromosome 19 - NC_051354.1Genomic Context describing neighboring genes Neighboring gene U6 spliceosomal RNA Neighboring gene actin, alpha 1, skeletal muscle Neighboring gene nucleoporin 133 Neighboring gene small nucleolar RNA SNORA2/SNORA34 family Neighboring gene TATA-box binding protein associated factor 5 like Neighboring gene URB2 ribosome biogenesis homolog

Genomic regions, transcripts, and products

Expression

  • Project title: A rat RNA-Seq transcriptomic BodyMap across 11 organs and 4 developmental stages
  • Description: 320 RNA samples isolated from 11 organs (adrenal gland, brain, heart, kidney, liver, lung, muscle, spleen, thymus, and testes or uterus) from both sexes of Fischer 344 rats across four developmental stages (2-, 6-, 21-, and 104-weeks-old)
  • BioProject: PRJNA238328
  • Publication: PMID 24510058
  • Analysis date: Mon Jun 6 17:44:12 2016

General gene information

Markers

Homology

Clone Names

  • MGC109142

Gene Ontology Provided by RGD

Function Evidence Code Pubs
enables ABC-type transporter activity IEA
Inferred from Electronic Annotation
more info
 
enables ATP binding ISO
Inferred from Sequence Orthology
more info
 
enables identical protein binding ISO
Inferred from Sequence Orthology
more info
 
enables molecular_function ND
No biological Data available
more info
 
enables protein homodimerization activity ISO
Inferred from Sequence Orthology
more info
 
Process Evidence Code Pubs
involved_in biological_process ND
No biological Data available
more info
 
involved_in erythrocyte development ISO
Inferred from Sequence Orthology
more info
 
involved_in heme biosynthetic process ISO
Inferred from Sequence Orthology
more info
 
involved_in mitochondrial unfolded protein response ISO
Inferred from Sequence Orthology
more info
 
involved_in positive regulation of erythrocyte differentiation ISO
Inferred from Sequence Orthology
more info
 
involved_in positive regulation of hemoglobin biosynthetic process ISO
Inferred from Sequence Orthology
more info
 
involved_in transmembrane transport IEA
Inferred from Electronic Annotation
more info
 
Component Evidence Code Pubs
is_active_in cellular_component ND
No biological Data available
more info
 
located_in integral component of mitochondrial membrane ISO
Inferred from Sequence Orthology
more info
 
located_in mitochondrial inner membrane ISO
Inferred from Sequence Orthology
more info
 
located_in mitochondrion ISO
Inferred from Sequence Orthology
more info
 

General protein information

Preferred Names
ATP-binding cassette sub-family B member 10, mitochondrial
Names
ATP-binding cassette, sub-family B (MDR/TAP), member 10
ATP-binding cassette, subfamily B (MDR/TAP), member 10

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001012166.1NP_001012166.1  ATP-binding cassette sub-family B member 10, mitochondrial

    See identical proteins and their annotated locations for NP_001012166.1

    Status: PROVISIONAL

    Source sequence(s)
    BC089900
    UniProtKB/TrEMBL
    Q5FVL8
    Related
    ENSRNOP00000024232.3, ENSRNOT00000024232.5
    Conserved Domains (3) summary
    cd03249
    Location:458698
    ABC_MTABC3_MDL1_MDL2; ATP-binding cassette domain of a mitochondrial protein MTABC3 and related proteins
    TIGR00958
    Location:10694
    3a01208; Conjugate Transporter-2 (CT2) Family protein
    pfam00664
    Location:142403
    ABC_membrane; ABC transporter transmembrane region

RefSeqs of Annotated Genomes: Rattus norvegicus Annotation Release 108 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference mRatBN7.2 Primary Assembly

Genomic

  1. NC_051354.1 Reference mRatBN7.2 Primary Assembly

    Range
    51952655..51982910 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_039097899.1XP_038953827.1  ATP-binding cassette sub-family B member 10, mitochondrial isoform X1

    Conserved Domains (2) summary
    cd18573
    Location:139430
    ABC_6TM_ABCB10_like; Six-transmembrane helical domain (6-TMD) of the mitochondrial transporter ABCB10 (subfamily B, member 10) and similar proteins
    cl38936
    Location:458521
    P-loop_NTPase; P-loop containing Nucleoside Triphosphate Hydrolases

RNA

  1. XR_005496678.1 RNA Sequence

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