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Cdh15 cadherin 15 [ Rattus norvegicus (Norway rat) ]

Gene ID: 361432, updated on 12-Aug-2018

Summary

Official Symbol
Cdh15provided by RGD
Official Full Name
cadherin 15provided by RGD
Primary source
RGD:1303000
See related
Ensembl:ENSRNOG00000027954
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Rattus norvegicus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Rattus
Summary
mouse homolog may play a role in muscle differentiation [RGD, Feb 2006]
Expression
Biased expression in Muscle (RPKM 66.4), Brain (RPKM 45.9) and 1 other tissue See more
Orthologs

Genomic context

See Cdh15 in Genome Data Viewer
Location:
19q12
Exon count:
14
Annotation release Status Assembly Chr Location
106 current Rnor_6.0 (GCF_000001895.5) 19 NC_005118.4 (55669661..55689986)
104 previous assembly Rnor_5.0 (GCF_000001895.4) 19 NC_005118.3 (66373237..66396730)

Chromosome 19 - NC_005118.4Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC102551324 Neighboring gene uncharacterized LOC108348960 Neighboring gene acyl-CoA synthetase family member 3 Neighboring gene ankyrin repeat domain 11 Neighboring gene 40S ribosomal protein S13-like

Genomic regions, transcripts, and products

Expression

  • Project title: A rat RNA-Seq transcriptomic BodyMap across 11 organs and 4 developmental stages
  • Description: 320 RNA samples isolated from 11 organs (adrenal gland, brain, heart, kidney, liver, lung, muscle, spleen, thymus, and testes or uterus) from both sexes of Fischer 344 rats across four developmental stages (2-, 6-, 21-, and 104-weeks-old)
  • BioProject: PRJNA238328
  • Publication: PMID 24510058
  • Analysis date: Mon Jun 6 17:44:12 2016

Bibliography

GeneRIFs: Gene References Into FunctionsWhat's a GeneRIF?

Pathways from BioSystems

General gene information

Markers

Homology

Gene Ontology Provided by RGD

Function Evidence Code Pubs
cadherin binding IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
calcium ion binding IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
calcium ion binding IEA
Inferred from Electronic Annotation
more info
 
cytoskeletal protein binding IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
protein homodimerization activity IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
Process Evidence Code Pubs
adherens junction organization IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
calcium-dependent cell-cell adhesion via plasma membrane cell adhesion molecules IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
cell-cell adhesion IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
cell-cell adhesion mediated by cadherin IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
cell-cell junction assembly IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
homophilic cell adhesion via plasma membrane adhesion molecules IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
homophilic cell adhesion via plasma membrane adhesion molecules IEA
Inferred from Electronic Annotation
more info
 
Component Evidence Code Pubs
Golgi apparatus IEA
Inferred from Electronic Annotation
more info
 
Golgi apparatus ISO
Inferred from Sequence Orthology
more info
 
catenin complex IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
caveola IEA
Inferred from Electronic Annotation
more info
 
caveola ISO
Inferred from Sequence Orthology
more info
 
cell surface IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
cell-cell adherens junction IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
cytosol IEA
Inferred from Electronic Annotation
more info
 
cytosol ISO
Inferred from Sequence Orthology
more info
 
integral component of membrane IEA
Inferred from Electronic Annotation
more info
 
neuromuscular junction IEA
Inferred from Electronic Annotation
more info
 
neuromuscular junction ISO
Inferred from Sequence Orthology
more info
 
plasma membrane IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 

General protein information

Preferred Names
cadherin-15
Names
M-cadherin

NCBI Reference Sequences (RefSeq)

RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_207613.1NP_997496.1  cadherin-15 precursor

    See identical proteins and their annotated locations for NP_997496.1

    Status: PROVISIONAL

    Source sequence(s)
    AB176538
    UniProtKB/TrEMBL
    Q75NI5
    Related
    ENSRNOP00000034685.4, ENSRNOT00000033352.5
    Conserved Domains (3) summary
    cd11304
    Location:155255
    Cadherin_repeat; Cadherin tandem repeat domain
    pfam00028
    Location:270366
    Cadherin; Cadherin domain
    pfam01049
    Location:639782
    Cadherin_C; Cadherin cytoplasmic region

RefSeqs of Annotated Genomes: Rattus norvegicus Annotation Release 106 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Rnor_6.0 Primary Assembly

Genomic

  1. NC_005118.4 Reference Rnor_6.0 Primary Assembly

    Range
    55669661..55689986
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Alternate Rn_Celera

Genomic

  1. AC_000087.1 Alternate Rn_Celera

    Range
    50143657..50163976
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
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