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Rad23a RAD23 homolog A, nucleotide excision repair protein [ Rattus norvegicus (Norway rat) ]

Gene ID: 361381, updated on 30-Sep-2021

Summary

Official Symbol
Rad23aprovided by RGD
Official Full Name
RAD23 homolog A, nucleotide excision repair proteinprovided by RGD
Primary source
RGD:1309899
See related
EnsemblRapid:ENSRNOG00000003026
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Rattus norvegicus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Rattus
Expression
Biased expression in Muscle (RPKM 292.7), Spleen (RPKM 265.4) and 9 other tissues See more
Orthologs
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Genomic context

See Rad23a in Genome Data Viewer
Location:
19q11
Exon count:
10
Annotation release Status Assembly Chr Location
108 current mRatBN7.2 (GCF_015227675.2) 19 NC_051354.1 (23313563..23320702)
106 previous assembly Rnor_6.0 (GCF_000001895.5) 19 NC_005118.4 (25949488..25956677, complement)

Chromosome 19 - NC_051354.1Genomic Context describing neighboring genes Neighboring gene phenylalanyl-tRNA synthetase subunit alpha Neighboring gene GADD45G interacting protein 1 Neighboring gene calreticulin Neighboring gene DAN domain BMP antagonist family member 5 Neighboring gene nuclear factor I X Neighboring gene uncharacterized LOC102546551

Genomic regions, transcripts, and products

Expression

  • Project title: A rat RNA-Seq transcriptomic BodyMap across 11 organs and 4 developmental stages
  • Description: 320 RNA samples isolated from 11 organs (adrenal gland, brain, heart, kidney, liver, lung, muscle, spleen, thymus, and testes or uterus) from both sexes of Fischer 344 rats across four developmental stages (2-, 6-, 21-, and 104-weeks-old)
  • BioProject: PRJNA238328
  • Publication: PMID 24510058
  • Analysis date: Mon Jun 6 17:44:12 2016

Interactions

Products Interactant Other Gene Complex Source Pubs Description

General gene information

Markers

Homology

Gene Ontology Provided by RGD

Function Evidence Code Pubs
enables damaged DNA binding IEA
Inferred from Electronic Annotation
more info
 
enables kinase binding ISO
Inferred from Sequence Orthology
more info
 
enables polyubiquitin modification-dependent protein binding IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
enables polyubiquitin modification-dependent protein binding ISO
Inferred from Sequence Orthology
more info
 
enables proteasome binding IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
enables ubiquitin binding IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
enables ubiquitin-specific protease binding ISO
Inferred from Sequence Orthology
more info
 
Component Evidence Code Pubs
located_in centriolar satellite IEA
Inferred from Electronic Annotation
more info
 
located_in centriolar satellite ISO
Inferred from Sequence Orthology
more info
 
located_in cytoplasm ISO
Inferred from Sequence Orthology
more info
 
is_active_in cytosol IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
located_in cytosol ISO
Inferred from Sequence Orthology
more info
 
located_in intracellular membrane-bounded organelle ISO
Inferred from Sequence Orthology
more info
 
is_active_in nucleoplasm IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
located_in nucleoplasm ISO
Inferred from Sequence Orthology
more info
 
located_in nucleus ISO
Inferred from Sequence Orthology
more info
 
part_of proteasome complex IEA
Inferred from Electronic Annotation
more info
 
part_of protein-containing complex ISO
Inferred from Sequence Orthology
more info
 

General protein information

Preferred Names
UV excision repair protein RAD23 homolog A

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001013190.1NP_001013208.1  UV excision repair protein RAD23 homolog A

    See identical proteins and their annotated locations for NP_001013208.1

    Status: PROVISIONAL

    Source sequence(s)
    BC084695
    UniProtKB/TrEMBL
    Q5XFX7
    Conserved Domains (4) summary
    cd01805
    Location:380
    RAD23_N; Ubiquitin-like domain of RAD23
    cd14377
    Location:162201
    UBA1_Rad23; UBA1 domain of Rad23 proteins found in metazoa
    TIGR00601
    Location:3325
    rad23; UV excision repair protein Rad23
    pfam09280
    Location:231286
    XPC-binding; XPC-binding domain

RefSeqs of Annotated Genomes: Rattus norvegicus Annotation Release 108 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference mRatBN7.2 Primary Assembly

Genomic

  1. NC_051354.1 Reference mRatBN7.2 Primary Assembly

    Range
    23313563..23320702
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_006255276.4XP_006255338.1  UV excision repair protein RAD23 homolog A isoform X1

    See identical proteins and their annotated locations for XP_006255338.1

    Conserved Domains (5) summary
    cd01805
    Location:380
    RAD23_N; Ubiquitin-like domain of RAD23
    cd14377
    Location:162201
    UBA1_Rad23; UBA1 domain of Rad23 proteins found in metazoa
    cd14427
    Location:319359
    UBA2_HR23A; UBA2 domain of UV excision repair protein RAD23 homolog A (HR23A) found in vertebrates
    TIGR00601
    Location:3361
    rad23; UV excision repair protein Rad23
    pfam09280
    Location:232287
    XPC-binding; XPC-binding domain
  2. XM_039097819.1XP_038953747.1  UV excision repair protein RAD23 homolog A isoform X3

    Conserved Domains (1) summary
    TIGR00601
    Location:3326
    rad23; UV excision repair protein Rad23
  3. XM_008772411.3XP_008770633.1  UV excision repair protein RAD23 homolog A isoform X4

    Conserved Domains (4) summary
    cd01805
    Location:380
    RAD23_N; Ubiquitin-like domain of RAD23
    smart00213
    Location:377
    UBQ; Ubiquitin homologues
    cd14377
    Location:162201
    UBA1_Rad23; UBA1 domain of Rad23 proteins found in metazoa
    pfam09280
    Location:232287
    XPC-binding; XPC-binding domain
  4. XM_006255277.4XP_006255339.1  UV excision repair protein RAD23 homolog A isoform X2

    UniProtKB/TrEMBL
    A0A0G2K7M2
    Related
    ENSRNOP00000004042.5, ENSRNOT00000004042.6
    Conserved Domains (5) summary
    cd01805
    Location:380
    RAD23_N; Ubiquitin-like domain of RAD23
    cd14377
    Location:162201
    UBA1_Rad23; UBA1 domain of Rad23 proteins found in metazoa
    cd14427
    Location:318358
    UBA2_HR23A; UBA2 domain of UV excision repair protein RAD23 homolog A (HR23A) found in vertebrates
    TIGR00601
    Location:3360
    rad23; UV excision repair protein Rad23
    pfam09280
    Location:231286
    XPC-binding; XPC-binding domain

RNA

  1. XR_005496664.1 RNA Sequence

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