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Golga7 golgin A7 [ Rattus norvegicus (Norway rat) ]

Gene ID: 361171, updated on 9-Sep-2018

Summary

Official Symbol
Golga7provided by RGD
Official Full Name
golgin A7provided by RGD
Primary source
RGD:1359725
See related
Ensembl:ENSRNOG00000017956
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Rattus norvegicus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Rattus
Expression
Biased expression in Brain (RPKM 356.5), Kidney (RPKM 282.5) and 9 other tissues See more
Orthologs

Genomic context

See Golga7 in Genome Data Viewer
Location:
16q12.5
Exon count:
6
Annotation release Status Assembly Chr Location
106 current Rnor_6.0 (GCF_000001895.5) 16 NC_005115.4 (73564172..73579389)
104 previous assembly Rnor_5.0 (GCF_000001895.4) 16 NC_005115.3 (73198435..73213647)

Chromosome 16 - NC_005115.4Genomic Context describing neighboring genes Neighboring gene secreted frizzled-related protein 1 Neighboring gene similar to heterogeneous nuclear ribonucleoprotein A3 Neighboring gene GINS complex subunit 4 Neighboring gene uncharacterized LOC108348420 Neighboring gene glycerol-3-phosphate acyltransferase 4

Genomic regions, transcripts, and products

Expression

  • Project title: A rat RNA-Seq transcriptomic BodyMap across 11 organs and 4 developmental stages
  • Description: 320 RNA samples isolated from 11 organs (adrenal gland, brain, heart, kidney, liver, lung, muscle, spleen, thymus, and testes or uterus) from both sexes of Fischer 344 rats across four developmental stages (2-, 6-, 21-, and 104-weeks-old)
  • BioProject: PRJNA238328
  • Publication: PMID 24510058
  • Analysis date: Mon Jun 6 17:44:12 2016

Pathways from BioSystems

Interactions

Products Interactant Other Gene Complex Source Pubs Description

General gene information

Markers

Homology

Clone Names

  • MGC93825

Gene Ontology Provided by RGD

Function Evidence Code Pubs
contributes_to protein-cysteine S-palmitoyltransferase activity IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
Process Evidence Code Pubs
Golgi to plasma membrane protein transport IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
Golgi to plasma membrane protein transport ISO
Inferred from Sequence Orthology
more info
 
Golgi to plasma membrane protein transport ISS
Inferred from Sequence or Structural Similarity
more info
 
peptidyl-L-cysteine S-palmitoylation IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
peptidyl-L-cysteine S-palmitoylation ISO
Inferred from Sequence Orthology
more info
 
peptidyl-L-cysteine S-palmitoylation ISS
Inferred from Sequence or Structural Similarity
more info
 
protein stabilization ISO
Inferred from Sequence Orthology
more info
 
protein stabilization ISS
Inferred from Sequence or Structural Similarity
more info
 
protein targeting to membrane IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
Component Evidence Code Pubs
Golgi stack IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
Golgi stack ISO
Inferred from Sequence Orthology
more info
 
Golgi stack ISS
Inferred from Sequence or Structural Similarity
more info
 
intrinsic component of Golgi membrane ISO
Inferred from Sequence Orthology
more info
 
intrinsic component of Golgi membrane ISS
Inferred from Sequence or Structural Similarity
more info
 
palmitoyltransferase complex IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
palmitoyltransferase complex ISO
Inferred from Sequence Orthology
more info
 
palmitoyltransferase complex ISS
Inferred from Sequence or Structural Similarity
more info
 

General protein information

Preferred Names
golgin subfamily A member 7
Names
golgi autoantigen, golgin subfamily a, 7

NCBI Reference Sequences (RefSeq)

RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001007731.1NP_001007732.1  golgin subfamily A member 7

    See identical proteins and their annotated locations for NP_001007732.1

    Status: PROVISIONAL

    Source sequence(s)
    BC078959
    UniProtKB/Swiss-Prot
    Q6AYQ1
    Related
    ENSRNOP00000033324.3, ENSRNOT00000030960.3
    Conserved Domains (1) summary
    pfam10256
    Location:12124
    Erf4; Golgin subfamily A member 7/ERF4 family

RefSeqs of Annotated Genomes: Rattus norvegicus Annotation Release 106 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Rnor_6.0 Primary Assembly

Genomic

  1. NC_005115.4 Reference Rnor_6.0 Primary Assembly

    Range
    73564172..73579389
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_017600185.1XP_017455674.1  golgin subfamily A member 7 isoform X1

    UniProtKB/Swiss-Prot
    Q6AYQ1
    Conserved Domains (1) summary
    pfam10256
    Location:12124
    Erf4; Golgin subfamily A member 7/ERF4 family
  2. XM_006253320.3XP_006253382.1  golgin subfamily A member 7 isoform X2

    Conserved Domains (1) summary
    pfam10256
    Location:12123
    Erf4; Golgin subfamily A member 7/ERF4 family

Alternate Rn_Celera

Genomic

  1. AC_000084.1 Alternate Rn_Celera

    Range
    66658822..66673968
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
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