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Zfp358 zinc finger protein 358 [ Rattus norvegicus (Norway rat) ]

Gene ID: 360754, updated on 3-Feb-2019

Summary

Official Symbol
Zfp358provided by RGD
Official Full Name
zinc finger protein 358provided by RGD
Primary source
RGD:1310416
See related
Ensembl:ENSRNOG00000000974
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Rattus norvegicus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Rattus
Expression
Biased expression in Muscle (RPKM 40.3), Lung (RPKM 29.2) and 9 other tissues See more
Orthologs

Genomic context

See Zfp358 in Genome Data Viewer
Location:
12p12
Exon count:
2
Annotation release Status Assembly Chr Location
106 current Rnor_6.0 (GCF_000001895.5) 12 NC_005111.4 (2046472..2050565)
104 previous assembly Rnor_5.0 (GCF_000001895.4) 12 NC_005111.3 (4209518..4213613)

Chromosome 12 - NC_005111.4Genomic Context describing neighboring genes Neighboring gene peroxisomal biogenesis factor 11 gamma Neighboring gene testis expressed 45 Neighboring gene mucolipin 1 Neighboring gene patatin-like phospholipase domain containing 6

Genomic regions, transcripts, and products

Expression

  • Project title: A rat RNA-Seq transcriptomic BodyMap across 11 organs and 4 developmental stages
  • Description: 320 RNA samples isolated from 11 organs (adrenal gland, brain, heart, kidney, liver, lung, muscle, spleen, thymus, and testes or uterus) from both sexes of Fischer 344 rats across four developmental stages (2-, 6-, 21-, and 104-weeks-old)
  • BioProject: PRJNA238328
  • Publication: PMID 24510058
  • Analysis date: Mon Jun 6 17:44:12 2016

General gene information

Markers

Homology

Gene Ontology Provided by RGD

Function Evidence Code Pubs
nucleic acid binding IEA
Inferred from Electronic Annotation
more info
 

NCBI Reference Sequences (RefSeq)

RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001108328.1NP_001101798.1  zinc finger protein 358

    See identical proteins and their annotated locations for NP_001101798.1

    Status: PROVISIONAL

    Source sequence(s)
    CH474084
    UniProtKB/TrEMBL
    D3ZRG3
    Related
    ENSRNOP00000001289.4, ENSRNOT00000001289.5
    Conserved Domains (5) summary
    COG5048
    Location:236429
    COG5048; FOG: Zn-finger [General function prediction only]
    sd00017
    Location:355375
    ZF_C2H2; C2H2 Zn finger [structural motif]
    pfam00096
    Location:241263
    zf-C2H2; Zinc finger, C2H2 type
    pfam13465
    Location:256280
    zf-H2C2_2; Zinc-finger double domain
    pfam15909
    Location:382460
    zf-C2H2_8; C2H2-type zinc ribbon

RefSeqs of Annotated Genomes: Rattus norvegicus Annotation Release 106 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Rnor_6.0 Primary Assembly

Genomic

  1. NC_005111.4 Reference Rnor_6.0 Primary Assembly

    Range
    2046472..2050565
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Alternate Rn_Celera

Genomic

  1. AC_000080.1 Alternate Rn_Celera

    Range
    3408729..3412822
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
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