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rpn-13 Proteasomal ubiquitin receptor ADRM1 homolog [ Caenorhabditis elegans ]

Gene ID: 3565888, updated on 19-Aug-2018

Summary

Gene symbol
rpn-13
Gene description
Proteasomal ubiquitin receptor ADRM1 homolog
Primary source
WormBase:WBGene00016981
Locus tag
CELE_C56G2.7
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Caenorhabditis elegans (strain: Bristol N2)
Lineage
Eukaryota; Metazoa; Ecdysozoa; Nematoda; Chromadorea; Rhabditida; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis

Genomic context

See rpn-13 in Genome Data Viewer
Location:
chromosome: III
Exon count:
4
Sequence:
Chromosome: III; NC_003281.10 (6340381..6341923, complement)

Chromosome III - NC_003281.10Genomic Context describing neighboring genes Neighboring gene hypothetical protein Neighboring gene ncRNA Neighboring gene ncRNA Neighboring gene Very-long-chain 3-oxooacyl-coA reductase let-767 Neighboring gene hypothetical protein Neighboring gene hypothetical protein

Bibliography

Related articles in PubMed

GeneRIFs: Gene References Into FunctionsWhat's a GeneRIF?

Pathways from BioSystems

Interactions

Products Interactant Other Gene Complex Source Pubs Description

General gene information

Markers

Gene Ontology Provided by WormBase

Function Evidence Code Pubs
endopeptidase activator activity IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
endopeptidase activator activity ISS
Inferred from Sequence or Structural Similarity
more info
 
proteasome binding IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
ubiquitin binding IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
Process Evidence Code Pubs
positive regulation of endopeptidase activity IEA
Inferred from Electronic Annotation
more info
 
proteasome assembly ISS
Inferred from Sequence or Structural Similarity
more info
 
ubiquitin-dependent protein catabolic process IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
Component Evidence Code Pubs
cytoplasm IEA
Inferred from Electronic Annotation
more info
 
nucleus IEA
Inferred from Electronic Annotation
more info
 
proteasome complex IEA
Inferred from Electronic Annotation
more info
 
proteasome complex ISS
Inferred from Sequence or Structural Similarity
more info
 
proteasome regulatory particle, lid subcomplex IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 

General protein information

Preferred Names
Proteasomal ubiquitin receptor ADRM1 homolog
NP_001348746.1
  • Partially confirmed by transcript evidence
NP_498387.2
  • Confirmed by transcript evidence

NCBI Reference Sequences (RefSeq)

Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003281.10 Reference assembly

    Range
    6340381..6341923 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_065986.6NP_498387.2  Proteasomal ubiquitin receptor ADRM1 homolog [Caenorhabditis elegans]

    See identical proteins and their annotated locations for NP_498387.2

    Status: REVIEWED

    UniProtKB/Swiss-Prot
    Q09289
    Conserved Domains (2) summary
    cd13314
    Location:19128
    PH_Rpn13; Pleckstrin homology-like domain of Regulatory Particle Non-ATPase 13
    pfam16550
    Location:237336
    RPN13_C; UCH-binding domain
  2. NM_001361721.1NP_001348746.1  Proteasomal ubiquitin receptor ADRM1 homolog [Caenorhabditis elegans]

    Status: REVIEWED

    Conserved Domains (2) summary
    cd13314
    Location:19128
    PH_Rpn13; Pleckstrin homology-like domain of Regulatory Particle Non-ATPase 13
    pfam16550
    Location:237333
    RPN13_C; UCH-binding domain
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