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sta-2 Signal transducer and activator of transcription b [ Caenorhabditis elegans ]

Gene ID: 3565291, updated on 18-Apr-2019

Summary

Gene symbol
sta-2
Gene description
Signal transducer and activator of transcription b
Primary source
WormBase:WBGene00010251
Locus tag
CELE_F58E6.1
Gene type
protein coding
RNA name
Signal transducer and activator of transcription b
RefSeq status
REVIEWED
Organism
Caenorhabditis elegans (strain: Bristol N2)
Lineage
Eukaryota; Metazoa; Ecdysozoa; Nematoda; Chromadorea; Rhabditida; Rhabditina; Rhabditomorpha; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis

Genomic context

See sta-2 in Genome Data Viewer
Location:
chromosome: V
Exon count:
11
Sequence:
Chromosome: V; NC_003283.11 (9741223..9744231)

Chromosome V - NC_003283.11Genomic Context describing neighboring genes Neighboring gene MARCH (Membrane-Associated Ring finger (C3HC4)) homolog Neighboring gene ncRNA Neighboring gene ncRNA Neighboring gene ncRNA

Bibliography

Pathways from BioSystems

  • Immune responses in the epidermis, organism-specific biosystem (from WikiPathways)
    Immune responses in the epidermis, organism-specific biosystem"Regulation of immune responses in the epidermis by two largely parallel pathways. The p38 MAPK pathway (proteins in this pathway are in black letters) regulates the expression nlp-29, an AMP-encodin...

General gene information

Markers

Gene Ontology Provided by WormBase

Function Evidence Code Pubs
DNA binding IEA
Inferred from Electronic Annotation
more info
 
DNA-binding transcription activator activity, RNA polymerase II-specific IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
DNA-binding transcription factor activity IEA
Inferred from Electronic Annotation
more info
 
RNA polymerase II proximal promoter sequence-specific DNA binding IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
protein binding IPI
Inferred from Physical Interaction
more info
PubMed 
Component Evidence Code Pubs
apical part of cell IDA
Inferred from Direct Assay
more info
PubMed 
cytoplasm IEA
Inferred from Electronic Annotation
more info
 
cytosol IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
endocytic vesicle IDA
Inferred from Direct Assay
more info
PubMed 
hemidesmosome IDA
Inferred from Direct Assay
more info
PubMed 
hemidesmosome associated protein complex IDA
Inferred from Direct Assay
more info
PubMed 
nucleus IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
nucleus IDA
Inferred from Direct Assay
more info
PubMed 
nucleus IEA
Inferred from Electronic Annotation
more info
 

General protein information

Preferred Names
Signal transducer and activator of transcription b
NP_001122963.1
  • Confirmed by transcript evidence

NCBI Reference Sequences (RefSeq)

Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003283.11 Reference assembly

    Range
    9741223..9744231
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_001129491.1NP_001122963.1  Signal transducer and activator of transcription b [Caenorhabditis elegans]

    See identical proteins and their annotated locations for NP_001122963.1

    Status: REVIEWED

    UniProtKB/Swiss-Prot
    Q20977
    Conserved Domains (2) summary
    cd09919
    Location:433545
    SH2_STAT_family; Src homology 2 (SH2) domain found in signal transducer and activator of transcription (STAT) family
    pfam02864
    Location:167359
    STAT_bind; STAT protein, DNA binding domain
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