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Tc00.1047053507019.40 histidyl-tRNA synthetase, putative [ Trypanosoma cruzi ]

Gene ID: 3542186, updated on 29-Oct-2024
Gene symbol
Tc00.1047053507019.40
Gene description
histidyl-tRNA synthetase, putative
Locus tag
Tc00.1047053507019.40
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Trypanosoma cruzi (strain: CL Brener)
Lineage
Eukaryota; Discoba; Euglenozoa; Kinetoplastea; Metakinetoplastina; Trypanosomatida; Trypanosomatidae; Trypanosoma; Schizotrypanum
Orthologs
all
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Try the new Transcripts and proteins table
See Tc00.1047053507019.40 in Genome Data Viewer
Location:
chromosome: Unknown
Exon count:
1

NW_001849574.1Genomic Context describing neighboring genes Neighboring gene nitrate reductase, putative Neighboring gene ribosome biogenesis regulatory protein (RRS1), putative Neighboring gene hypothetical protein Neighboring gene hypothetical protein

Genomic Sequence:
NW_001849574.1

Go to nucleotide: Graphics FASTA GenBank

Related articles in PubMed

  1. Crystal structures of trypanosomal histidyl-tRNA synthetase illuminate differences between eukaryotic and prokaryotic homologs. Merritt EA, et al. J Mol Biol, 2010 Mar 26. PMID 20132829, Free PMC Article
  2. The genome sequence of Trypanosoma cruzi, etiologic agent of Chagas disease. El-Sayed NM, et al. Science, 2005 Jul 15. PMID 16020725
  3. Comparative genomics of trypanosomatid parasitic protozoa. El-Sayed NM, et al. Science, 2005 Jul 15. PMID 16020724
  4. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  5. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

What's a GeneRIF?
  1. HisRSs in general contain an extra domain inserted between conserved motifs 2 and 3 of the Class II aminoacyl-tRNA synthetase catalytic core.
    Title: Crystal structures of trypanosomal histidyl-tRNA synthetase illuminate differences between eukaryotic and prokaryotic homologs.
Submit: New GeneRIF Correction

Homology

  • homozygous allele located in a merged assembly of Esmeraldo and non-Esmeraldo homologous sequences or a repetitive gene whose different copies were merged during the assembly.

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables ATP binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables histidine-tRNA ligase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in histidyl-tRNA aminoacylation IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in cytoplasm IEA
Inferred from Electronic Annotation
more info
 PubMed 
Preferred Names
histidyl-tRNA synthetase, putative
XP_811246.1
  • homozygous allele located in a merged assembly of Esmeraldo and non-Esmeraldo homologous sequences or a repetitive gene whose different copies were merged during the assembly.

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NW_001849574.1 Reference assembly

    Range
    161126..162562 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_806153.1 → XP_811246.1  histidyl-tRNA synthetase, putative [Trypanosoma cruzi]

    See identical proteins and their annotated locations for XP_811246.1

    Status: PROVISIONAL

    UniProtKB/TrEMBL
    A0A2V2V7Y8, A0A2V2WYU5, Q4DA54, V5BGT0
    Conserved Domains (1) summary
    PLN02530
    Location:48 → 462
    PLN02530; histidine-tRNA ligase
Nucleotide Protein
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