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LCE2A late cornified envelope 2A [ Homo sapiens (human) ]

Gene ID: 353139, updated on 21-Dec-2019

Summary

Official Symbol
LCE2Aprovided by HGNC
Official Full Name
late cornified envelope 2Aprovided by HGNC
Primary source
HGNC:HGNC:29469
See related
Ensembl:ENSG00000187173 MIM:612609
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Also known as
LEP9
Expression
Restricted expression toward skin (RPKM 30.4) See more

Genomic context

See LCE2A in Genome Data Viewer
Location:
1q21.3
Exon count:
2
Annotation release Status Assembly Chr Location
109.20191205 current GRCh38.p13 (GCF_000001405.39) 1 NC_000001.11 (152698345..152699442)
105 previous assembly GRCh37.p13 (GCF_000001405.25) 1 NC_000001.10 (152670840..152671918)

Chromosome 1 - NC_000001.11Genomic Context describing neighboring genes Neighboring gene late cornified envelope 2C Neighboring gene late cornified envelope 2B Neighboring gene late cornified envelope 4A Neighboring gene chromosome 1 open reading frame 68

Genomic regions, transcripts, and products

Expression

  • Project title: HPA RNA-seq normal tissues
  • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
  • BioProject: PRJEB4337
  • Publication: PMID 24309898
  • Analysis date: Wed Apr 4 07:08:55 2018

Interactions

Products Interactant Other Gene Complex Source Pubs Description

General gene information

Gene Ontology Provided by GOA

Function Evidence Code Pubs
protein binding IPI
Inferred from Physical Interaction
more info
PubMed 
Process Evidence Code Pubs
keratinization IEA
Inferred from Electronic Annotation
more info
 

General protein information

Preferred Names
late cornified envelope protein 2A
Names
late envelope protein 9

NCBI Reference Sequences (RefSeq)

RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_178428.4NP_848515.1  late cornified envelope protein 2A

    See identical proteins and their annotated locations for NP_848515.1

    Status: VALIDATED

    Source sequence(s)
    AL139247, BC119707, BG217525
    Consensus CDS
    CCDS1021.1
    UniProtKB/Swiss-Prot
    Q5TA79
    Related
    ENSP00000357768.1, ENST00000368779.2
    Conserved Domains (1) summary
    pfam14672
    Location:71105
    LCE; Late cornified envelope

RefSeqs of Annotated Genomes: Homo sapiens Updated Annotation Release 109.20191205

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p13 Primary Assembly

Genomic

  1. NC_000001.11 Reference GRCh38.p13 Primary Assembly

    Range
    152698345..152699442
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
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