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arntl1b aryl hydrocarbon receptor nuclear translocator-like 1b [ Danio rerio (zebrafish) ]

Gene ID: 352935, updated on 26-Oct-2019

Summary

Official Symbol
arntl1bprovided by ZNC
Official Full Name
aryl hydrocarbon receptor nuclear translocator-like 1bprovided by ZNC
Primary source
ZFIN:ZDB-GENE-030408-1
See related
Ensembl:ENSDARG00000035732
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Danio rerio
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Cyprinidae; Danio
Also known as
bmal1b; zfBMAL3

Genomic context

See arntl1b in Genome Data Viewer
Location:
chromosome: 7
Exon count:
20
Annotation release Status Assembly Chr Location
106 current GRCz11 (GCF_000002035.6) 7 NC_007118.7 (66048087..66105875)
105 previous assembly GRCz10 (GCF_000002035.5) 7 NC_007118.6 (65824441..65882735)
103 previous assembly Zv9 (GCF_000002035.4) 7 NC_007118.5 (67945135..68002906, complement)

Chromosome 7 - NC_007118.7Genomic Context describing neighboring genes Neighboring gene Ras association domain family member 10b Neighboring gene uncharacterized LOC101883932 Neighboring gene BTB (POZ) domain containing 10b Neighboring gene parathyroid hormone 1b

Genomic regions, transcripts, and products

Pathways from BioSystems

  • Herpes simplex infection, organism-specific biosystem (from KEGG)
    Herpes simplex infection, organism-specific biosystemHerpes simplex virus (HSV) infections are very common worldwide, with the prevalence of HSV-1 reaching up to 80%-90%. Primary infection with HSV takes place in the mucosa, followed by the establishme...
  • Herpes simplex infection, conserved biosystem (from KEGG)
    Herpes simplex infection, conserved biosystemHerpes simplex virus (HSV) infections are very common worldwide, with the prevalence of HSV-1 reaching up to 80%-90%. Primary infection with HSV takes place in the mucosa, followed by the establishme...

General gene information

Gene Ontology Provided by ZFIN

Function Evidence Code Pubs
contributes_to DNA binding IDA
Inferred from Direct Assay
more info
PubMed 
DNA binding IEA
Inferred from Electronic Annotation
more info
 
DNA-binding transcription factor activity IEA
Inferred from Electronic Annotation
more info
 
chromatin binding IDA
Inferred from Direct Assay
more info
PubMed 
protein binding IPI
Inferred from Physical Interaction
more info
PubMed 
protein dimerization activity IEA
Inferred from Electronic Annotation
more info
 
Process Evidence Code Pubs
photoperiodism IEP
Inferred from Expression Pattern
more info
PubMed 
positive regulation of gene expression IGI
Inferred from Genetic Interaction
more info
PubMed 
regulation of gene expression IGI
Inferred from Genetic Interaction
more info
PubMed 
regulation of transcription, DNA-templated IEA
Inferred from Electronic Annotation
more info
 
Component Evidence Code Pubs
chromatin IDA
Inferred from Direct Assay
more info
PubMed 
cytoplasm IEA
Inferred from Electronic Annotation
more info
 
nucleus IEA
Inferred from Electronic Annotation
more info
 
transcription factor complex IEA
Inferred from Electronic Annotation
more info
 
transcription factor complex IPI
Inferred from Physical Interaction
more info
PubMed 

General protein information

Preferred Names
aryl hydrocarbon receptor nuclear translocator-like protein 1
Names
brain and muscle ARNT-like 1b

NCBI Reference Sequences (RefSeq)

RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_178300.1NP_840085.1  aryl hydrocarbon receptor nuclear translocator-like protein 1

    See identical proteins and their annotated locations for NP_840085.1

    Status: PROVISIONAL

    Source sequence(s)
    AB087257
    UniProtKB/TrEMBL
    Q8JIG1
    Related
    ENSDARP00000114569.1, ENSDART00000139227.2
    Conserved Domains (5) summary
    smart00091
    Location:151210
    PAS; PAS domain
    cd00130
    Location:343438
    PAS; PAS domain; PAS motifs appear in archaea, eubacteria and eukarya. Probably the most surprising identification of a PAS domain was that in EAG-like K+-channels. PAS domains have been found to bind ligands, and to act as sensors for light and oxygen in ...
    pfam00010
    Location:76128
    HLH; Helix-loop-helix DNA-binding domain
    pfam00989
    Location:148255
    PAS; PAS fold
    pfam14598
    Location:341444
    PAS_11; PAS domain

RefSeqs of Annotated Genomes: Danio rerio Annotation Release 106 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCz11 Primary Assembly

Genomic

  1. NC_007118.7 Reference GRCz11 Primary Assembly

    Range
    66048087..66105875
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_005166616.4XP_005166673.1  aryl hydrocarbon receptor nuclear translocator-like protein 1 isoform X1

    Related
    ENSDARP00000095296.4, ENSDART00000104523.6
    Conserved Domains (5) summary
    smart00091
    Location:205264
    PAS; PAS domain
    cd00130
    Location:397492
    PAS; PAS domain; PAS motifs appear in archaea, eubacteria and eukarya. Probably the most surprising identification of a PAS domain was that in EAG-like K+-channels. PAS domains have been found to bind ligands, and to act as sensors for light and oxygen in ...
    pfam00010
    Location:130182
    HLH; Helix-loop-helix DNA-binding domain
    pfam00989
    Location:202309
    PAS; PAS fold
    pfam14598
    Location:395498
    PAS_11; PAS domain
  2. XM_021477412.1XP_021333087.1  aryl hydrocarbon receptor nuclear translocator-like protein 1 isoform X2

    Conserved Domains (3) summary
    smart00091
    Location:200259
    PAS; PAS domain
    pfam00010
    Location:125177
    HLH; Helix-loop-helix DNA-binding domain
    cl25986
    Location:390493
    PAS_3; PAS fold
  3. XM_009303573.3XP_009301848.1  aryl hydrocarbon receptor nuclear translocator-like protein 1 isoform X3

    Conserved Domains (5) summary
    smart00091
    Location:182241
    PAS; PAS domain
    cd00130
    Location:374469
    PAS; PAS domain; PAS motifs appear in archaea, eubacteria and eukarya. Probably the most surprising identification of a PAS domain was that in EAG-like K+-channels. PAS domains have been found to bind ligands, and to act as sensors for light and oxygen in ...
    pfam00010
    Location:107159
    HLH; Helix-loop-helix DNA-binding domain
    pfam00989
    Location:179286
    PAS; PAS fold
    pfam14598
    Location:372475
    PAS_11; PAS domain

Reference GRCz11 ALT_DRER_TU_1

Genomic

  1. NW_018394713.1 Reference GRCz11 ALT_DRER_TU_1

    Range
    209733..240518
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
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