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GYG2P1 glycogenin 2 pseudogene 1 [ Homo sapiens (human) ]

Gene ID: 352887, updated on 17-Jun-2024

Summary

Official Symbol
GYG2P1provided by HGNC
Official Full Name
glycogenin 2 pseudogene 1provided by HGNC
Primary source
HGNC:HGNC:4701
See related
Ensembl:ENSG00000291034 AllianceGenome:HGNC:4701
Gene type
pseudo
RefSeq status
VALIDATED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Also known as
GYG2P
Expression
Biased expression in fat (RPKM 1.4), small intestine (RPKM 0.7) and 11 other tissues See more
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Genomic context

See GYG2P1 in Genome Data Viewer
Location:
Yq11.221
Exon count:
5
Annotation release Status Assembly Chr Location
RS_2023_10 current GRCh38.p14 (GCF_000001405.40) Y NC_000024.10 (12406116..12421590, complement)
RS_2023_10 current T2T-CHM13v2.0 (GCF_009914755.1) Y NC_060948.1 (13313741..13329215, complement)
105.20220307 previous assembly GRCh37.p13 (GCF_000001405.25) Y NC_000024.9 (14517915..14533389, complement)

Chromosome Y - NC_000024.10Genomic Context describing neighboring genes Neighboring gene arylsulfatase L pseudogene 1 Neighboring gene uncharacterized LOC107987343 Neighboring gene arylsulfatase D pseudogene 1 Neighboring gene glycoprotein Xg-like Neighboring gene XG Y-linked 1 (pseudogene) Neighboring gene shroom family member 2 pseudogene 1

Genomic regions, transcripts, and products

Expression

  • Project title: HPA RNA-seq normal tissues
  • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
  • BioProject: PRJEB4337
  • Publication: PMID 24309898
  • Analysis date: Wed Apr 4 07:08:55 2018

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

RNA

  1. NR_033667.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AB371555, AC245170, BF026648
    Related
    ENST00000382963.5

RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2023_10

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000024.10 Reference GRCh38.p14 Primary Assembly

    Range
    12406116..12421590 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060948.1 Alternate T2T-CHM13v2.0

    Range
    13313741..13329215 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Suppressed Reference Sequence(s)

The following Reference Sequences have been suppressed. Explain

  1. NG_002811.3: Suppressed sequence

    Description
    NG_002811.3: This RefSeq was permanently suppressed because it is now thought that this gene is transcribed, although it does not make a functional protein.